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A more precise characterization of chaperonin substrates.
Raineri E, Ribeca P, Serrano L, Maier T. Raineri E, et al. Among authors: ribeca p. Bioinformatics. 2010 Jul 15;26(14):1685-9. doi: 10.1093/bioinformatics/btq287. Epub 2010 Jun 2. Bioinformatics. 2010. PMID: 20519287
Evidence for transcript networks composed of chimeric RNAs in human cells.
Djebali S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM, Howald C, Foissac S, Ucla C, Chrast J, Ribeca P, Martin D, Murray RR, Yang X, Ghamsari L, Lin C, Bell I, Dumais E, Drenkow J, Tress ML, Gelpí JL, Orozco M, Valencia A, van Berkum NL, Lajoie BR, Vidal M, Stamatoyannopoulos J, Batut P, Dobin A, Harrow J, Hubbard T, Dekker J, Frankish A, Salehi-Ashtiani K, Reymond A, Antonarakis SE, Guigó R, Gingeras TR. Djebali S, et al. Among authors: ribeca p. PLoS One. 2012;7(1):e28213. doi: 10.1371/journal.pone.0028213. Epub 2012 Jan 4. PLoS One. 2012. PMID: 22238572 Free PMC article.
Assessment of transcript reconstruction methods for RNA-seq.
Steijger T, Abril JF, Engström PG, Kokocinski F; RGASP Consortium; Hubbard TJ, Guigó R, Harrow J, Bertone P. Steijger T, et al. Nat Methods. 2013 Dec;10(12):1177-84. doi: 10.1038/nmeth.2714. Epub 2013 Nov 3. Nat Methods. 2013. PMID: 24185837 Free PMC article.
Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome.
Ferretti L, Di Nardo A, Singer B, Lasecka-Dykes L, Logan G, Wright CF, Pérez-Martín E, King DP, Tuthill TJ, Ribeca P. Ferretti L, et al. Among authors: ribeca p. Viruses. 2018 Apr 25;10(5):221. doi: 10.3390/v10050221. Viruses. 2018. PMID: 29693634 Free PMC article.
Persistent Infection of African Buffalo (Syncerus caffer) with Foot-and-Mouth Disease Virus: Limited Viral Evolution and No Evidence of Antibody Neutralization Escape.
Cortey M, Ferretti L, Pérez-Martín E, Zhang F, de Klerk-Lorist LM, Scott K, Freimanis G, Seago J, Ribeca P, van Schalkwyk L, Juleff ND, Maree FF, Charleston B. Cortey M, et al. Among authors: ribeca p. J Virol. 2019 Jul 17;93(15):e00563-19. doi: 10.1128/JVI.00563-19. Print 2019 Aug 1. J Virol. 2019. PMID: 31092573 Free PMC article.
Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid.
Ferretti L, Pérez-Martín E, Zhang F, Maree F, de Klerk-Lorist LM, van Schalkwykc L, Juleff ND, Charleston B, Ribeca P. Ferretti L, et al. Among authors: ribeca p. PLoS Pathog. 2020 Jan 6;16(1):e1008235. doi: 10.1371/journal.ppat.1008235. eCollection 2020 Jan. PLoS Pathog. 2020. PMID: 31905219 Free PMC article.
52 results