Reiss DJ - Search Results

1

Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii.

López García de Lomana A, Schäuble S, Valenzuela J, Imam S, Carter W, Bilgin DD, Yohn CB, Turkarslan S, Reiss DJ, Orellana MV, Price ND, Baliga NS. López García de Lomana A, et al. Among authors: reiss dj. Biotechnol Biofuels. 2015 Dec 2;8:207. doi: 10.1186/s13068-015-0391-z. eCollection 2015. Biotechnol Biofuels. 2015. PMID: 26633994 Free PMC article.

2

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS. Shannon PT, et al. Among authors: reiss dj. BMC Bioinformatics. 2006 Mar 28;7:176. doi: 10.1186/1471-2105-7-176. BMC Bioinformatics. 2006. PMID: 16569235 Free PMC article.

3

A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability.

Schmid AK, Reiss DJ, Pan M, Koide T, Baliga NS. Schmid AK, et al. Among authors: reiss dj. Mol Syst Biol. 2009;5:282. doi: 10.1038/msb.2009.40. Epub 2009 Jun 16. Mol Syst Biol. 2009. PMID: 19536205 Free PMC article.

4

A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen.

Yoon SH, Turkarslan S, Reiss DJ, Pan M, Burn JA, Costa KC, Lie TJ, Slagel J, Moritz RL, Hackett M, Leigh JA, Baliga NS. Yoon SH, et al. Among authors: reiss dj. Genome Res. 2013 Nov;23(11):1839-51. doi: 10.1101/gr.153916.112. Epub 2013 Oct 2. Genome Res. 2013. PMID: 24089473 Free PMC article.

5

Network portal: a database for storage, analysis and visualization of biological networks.

Turkarslan S, Wurtmann EJ, Wu WJ, Jiang N, Bare JC, Foley K, Reiss DJ, Novichkov P, Baliga NS. Turkarslan S, et al. Among authors: reiss dj. Nucleic Acids Res. 2014 Jan;42(Database issue):D184-90. doi: 10.1093/nar/gkt1190. Epub 2013 Nov 23. Nucleic Acids Res. 2014. PMID: 24271392 Free PMC article.

6

A high-resolution network model for global gene regulation in Mycobacterium tuberculosis.

Peterson EJ, Reiss DJ, Turkarslan S, Minch KJ, Rustad T, Plaisier CL, Longabaugh WJ, Sherman DR, Baliga NS. Peterson EJ, et al. Among authors: reiss dj. Nucleic Acids Res. 2014 Oct;42(18):11291-303. doi: 10.1093/nar/gku777. Epub 2014 Sep 17. Nucleic Acids Res. 2014. PMID: 25232098 Free PMC article.

7

cMonkey2: Automated, systematic, integrated detection of co-regulated gene modules for any organism.

Reiss DJ, Plaisier CL, Wu WJ, Baliga NS. Reiss DJ, et al. Nucleic Acids Res. 2015 Jul 27;43(13):e87. doi: 10.1093/nar/gkv300. Epub 2015 Apr 14. Nucleic Acids Res. 2015. PMID: 25873626 Free PMC article.

8

A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis.

Turkarslan S, Peterson EJ, Rustad TR, Minch KJ, Reiss DJ, Morrison R, Ma S, Price ND, Sherman DR, Baliga NS. Turkarslan S, et al. Among authors: reiss dj. Sci Data. 2015 Mar 31;2:150010. doi: 10.1038/sdata.2015.10. eCollection 2015. Sci Data. 2015. PMID: 25977815 Free PMC article.

9

The anatomy of microbial cell state transitions in response to oxygen.

Schmid AK, Reiss DJ, Kaur A, Pan M, King N, Van PT, Hohmann L, Martin DB, Baliga NS. Schmid AK, et al. Among authors: reiss dj. Genome Res. 2007 Oct;17(10):1399-413. doi: 10.1101/gr.6728007. Epub 2007 Sep 4. Genome Res. 2007. PMID: 17785531 Free PMC article.

10

Model-based deconvolution of genome-wide DNA binding.

Reiss DJ, Facciotti MT, Baliga NS. Reiss DJ, et al. Bioinformatics. 2008 Feb 1;24(3):396-403. doi: 10.1093/bioinformatics/btm592. Epub 2007 Dec 1. Bioinformatics. 2008. PMID: 18056063

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