Reinders MJ - Search Results

1

Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat cultures.

De Nicola R, Hazelwood LA, De Hulster EA, Walsh MC, Knijnenburg TA, Reinders MJ, Walker GM, Pronk JT, Daran JM, Daran-Lapujade P. De Nicola R, et al. Among authors: reinders mj. Appl Environ Microbiol. 2007 Dec;73(23):7680-92. doi: 10.1128/AEM.01445-07. Epub 2007 Oct 12. Appl Environ Microbiol. 2007. PMID: 17933919 Free PMC article.

2

Exploiting combinatorial cultivation conditions to infer transcriptional regulation.

Knijnenburg TA, de Winde JH, Daran JM, Daran-Lapujade P, Pronk JT, Reinders MJ, Wessels LF. Knijnenburg TA, et al. Among authors: reinders mj. BMC Genomics. 2007 Jan 22;8:25. doi: 10.1186/1471-2164-8-25. BMC Genomics. 2007. PMID: 17241460 Free PMC article.

3

Generic and specific transcriptional responses to different weak organic acids in anaerobic chemostat cultures of Saccharomyces cerevisiae.

Abbott DA, Knijnenburg TA, de Poorter LM, Reinders MJ, Pronk JT, van Maris AJ. Abbott DA, et al. Among authors: reinders mj. FEMS Yeast Res. 2007 Sep;7(6):819-33. doi: 10.1111/j.1567-1364.2007.00242.x. Epub 2007 Apr 30. FEMS Yeast Res. 2007. PMID: 17484738

4

Integration of known transcription factor binding site information and gene expression data to advance from co-expression to co-regulation.

Clements M, van Someren EP, Knijnenburg TA, Reinders MJ. Clements M, et al. Among authors: reinders mj. Genomics Proteomics Bioinformatics. 2007 May;5(2):86-101. doi: 10.1016/S1672-0229(07)60019-9. Genomics Proteomics Bioinformatics. 2007. PMID: 17893074 Free PMC article.

5

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes.

de Groot MJL, Daran-Lapujade P, van Breukelen B, Knijnenburg TA, de Hulster EAF, Reinders MJT, Pronk JT, Heck AJR, Slijper M. de Groot MJL, et al. Microbiology (Reading). 2007 Nov;153(Pt 11):3864-3878. doi: 10.1099/mic.0.2007/009969-0. Microbiology (Reading). 2007. PMID: 17975095 Free article.

6

Combinatorial influence of environmental parameters on transcription factor activity.

Knijnenburg TA, Wessels LF, Reinders MJ. Knijnenburg TA, et al. Among authors: reinders mj. Bioinformatics. 2008 Jul 1;24(13):i172-81. doi: 10.1093/bioinformatics/btn155. Bioinformatics. 2008. PMID: 18586711 Free PMC article.

7

Creating gene set activity profiles with time-series expression data.

Knijnenburg TA, Wessels LF, Reinders MJ. Knijnenburg TA, et al. Among authors: reinders mj. Int J Bioinform Res Appl. 2008;4(3):306-23. doi: 10.1504/IJBRA.2008.019577. Int J Bioinform Res Appl. 2008. PMID: 18640906

8

Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data.

Knijnenburg TA, Daran JM, van den Broek MA, Daran-Lapujade PA, de Winde JH, Pronk JT, Reinders MJ, Wessels LF. Knijnenburg TA, et al. Among authors: reinders mj. BMC Genomics. 2009 Jan 27;10:53. doi: 10.1186/1471-2164-10-53. BMC Genomics. 2009. PMID: 19173729 Free PMC article.

9

Fewer permutations, more accurate P-values.

Knijnenburg TA, Wessels LF, Reinders MJ, Shmulevich I. Knijnenburg TA, et al. Among authors: reinders mj. Bioinformatics. 2009 Jun 15;25(12):i161-8. doi: 10.1093/bioinformatics/btp211. Bioinformatics. 2009. PMID: 19477983 Free PMC article.

10

Integrating genome assemblies with MAIA.

Nijkamp J, Winterbach W, van den Broek M, Daran JM, Reinders M, de Ridder D. Nijkamp J, et al. Bioinformatics. 2010 Sep 15;26(18):i433-9. doi: 10.1093/bioinformatics/btq366. Bioinformatics. 2010. PMID: 20823304 Free PMC article.

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