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Lessons learned from SARS-CoV-2 measurements in wastewater.
Sharkey ME, Kumar N, Mantero AMA, Babler KM, Boone MM, Cardentey Y, Cortizas EM, Grills GS, Herrin J, Kemper JM, Kenney R, Kobetz E, Laine J, Lamar WE, Mader CC, Mason CE, Quintero AZ, Reding BD, Roca MA, Ryon K, Solle NS, Schürer SC, Shukla B, Stevenson M, Stone T, Tallon JJ Jr, Venkatapuram SS, Vidovic D, Williams SL, Young B, Solo-Gabriele HM. Sharkey ME, et al. Among authors: reding bd. Sci Total Environ. 2021 Dec 1;798:149177. doi: 10.1016/j.scitotenv.2021.149177. Epub 2021 Jul 21. Sci Total Environ. 2021. PMID: 34375259 Free PMC article.
Relationships between SARS-CoV-2 in Wastewater and COVID-19 Clinical Cases and Hospitalizations, with and without Normalization against Indicators of Human Waste.
Zhan Q, Babler KM, Sharkey ME, Amirali A, Beaver CC, Boone MM, Comerford S, Cooper D, Cortizas EM, Currall BB, Foox J, Grills GS, Kobetz E, Kumar N, Laine J, Lamar WE, Mantero AMA, Mason CE, Reding BD, Robertson M, Roca MA, Ryon K, Schürer SC, Shukla BS, Solle NS, Stevenson M, Tallon JJ Jr, Thomas C, Thomas T, Vidović D, Williams SL, Yin X, Solo-Gabriele HM. Zhan Q, et al. Among authors: reding bd. ACS ES T Water. 2022 Nov 11;2(11):1992-2003. doi: 10.1021/acsestwater.2c00045. Epub 2022 May 26. ACS ES T Water. 2022. PMID: 36398131 Free PMC article.
Degradation rates influence the ability of composite samples to represent 24-hourly means of SARS-CoV-2 and other microbiological target measures in wastewater.
Babler KM, Sharkey ME, Abelson S, Amirali A, Benitez A, Cosculluela GA, Grills GS, Kumar N, Laine J, Lamar W, Lamm ED, Lyu J, Mason CE, McCabe PM, Raghavender J, Reding BD, Roca MA, Schürer SC, Stevenson M, Szeto A, Tallon JJ Jr, Vidović D, Zarnegarnia Y, Solo-Gabriele HM. Babler KM, et al. Among authors: reding bd. Sci Total Environ. 2023 Apr 1;867:161423. doi: 10.1016/j.scitotenv.2023.161423. Epub 2023 Jan 6. Sci Total Environ. 2023. PMID: 36623667 Free PMC article.
Monkeypox viral nucleic acids detected using both DNA and RNA extraction workflows.
Sharkey ME, Babler KM, Shukla BS, Abelson SM, Alsuliman B, Amirali A, Comerford S, Grills GS, Kumar N, Laine J, Lee J, Lamar WE, Mason CE, Penso J, Reding BD, Schürer SC, Stevenson M, Vidović D, Solo-Gabriele HM. Sharkey ME, et al. Among authors: reding bd. Sci Total Environ. 2023 Sep 10;890:164289. doi: 10.1016/j.scitotenv.2023.164289. Epub 2023 May 20. Sci Total Environ. 2023. PMID: 37216988 Free PMC article.
Geospatially-resolved public-health surveillance via wastewater sequencing.
Tierney BT, Foox J, Ryon KA, Butler D, Damle N, Young BG, Mozsary C, Babler KM, Yin X, Carattini Y, Andrews D, Solle NS, Kumar N, Shukla B, Vidovic D, Currall B, Williams SL, Schürer SC, Stevenson M, Amirali A, Beaver CC, Kobetz E, Boone MM, Reding B, Laine J, Comerford S, Lamar WE, Tallon JJ, Hirschberg JW, Proszynski J, Sharkey ME, Church GM, Grills GS, Solo-Gabriele HM, Mason CE. Tierney BT, et al. medRxiv [Preprint]. 2023 Jun 1:2023.05.31.23290781. doi: 10.1101/2023.05.31.23290781. medRxiv. 2023. PMID: 37398062 Free PMC article. Preprint.
Detection of the clinically persistent, pathogenic yeast spp. Candida auris from hospital and municipal wastewater in Miami-Dade County, Florida.
Babler K, Sharkey M, Arenas S, Amirali A, Beaver C, Comerford S, Goodman K, Grills G, Holung M, Kobetz E, Laine J, Lamar W, Mason C, Pronty D, Reding B, Schürer S, Schaefer Solle N, Stevenson M, Vidović D, Solo-Gabriele H, Shukla B. Babler K, et al. Sci Total Environ. 2023 Nov 10;898:165459. doi: 10.1016/j.scitotenv.2023.165459. Epub 2023 Jul 12. Sci Total Environ. 2023. PMID: 37442462
Comparison of Electronegative Filtration to Magnetic Bead-Based Concentration and V2G-qPCR to RT-qPCR for Quantifying Viral SARS-CoV-2 RNA from Wastewater.
Babler KM, Amirali A, Sharkey ME, Williams SL, Boone MM, Cosculluela GA, Currall BB, Grills GS, Laine J, Mason CE, Reding BD, Schürer SC, Stevenson M, Vidovic D, Solo-Gabriele HM. Babler KM, et al. Among authors: reding bd. ACS ES T Water. 2022 Nov 11;2(11):2004-2013. doi: 10.1021/acsestwater.2c00047. Epub 2022 May 17. ACS ES T Water. 2022. PMID: 37601294 Free PMC article.
Expanding a Wastewater-Based Surveillance Methodology for DNA Isolation from a Workflow Optimized for SARS-CoV-2 RNA Quantification.
Babler KM, Sharkey ME, Amirali A, Boone MM, Comerford S, Currall BB, Grills GS, Laine J, Mason CE, Reding B, Schürer S, Stevenson M, Vidović D, Williams SL, Solo-Gabriele HM. Babler KM, et al. J Biomol Tech. 2023 Dec 20;34(4):3fc1f5fe.dfa8d906. doi: 10.7171/3fc1f5fe.dfa8d906. eCollection 2023 Dec. J Biomol Tech. 2023. PMID: 38268997 Free PMC article.
Wastewater based surveillance can be used to reduce clinical testing intensity on a university campus.
Amirali A, Babler KM, Sharkey ME, Beaver CC, Boone MM, Comerford S, Cooper D, Currall BB, Goodman KW, Grills GS, Kobetz E, Kumar N, Laine J, Lamar WE, Mason CE, Reding BD, Roca MA, Ryon K, Schürer SC, Shukla BS, Solle NS, Stevenson M, Tallon JJ Jr, Vidović D, Williams SL, Yin X, Solo-Gabriele HM. Amirali A, et al. Among authors: reding bd. Sci Total Environ. 2024 Mar 25;918:170452. doi: 10.1016/j.scitotenv.2024.170452. Epub 2024 Jan 29. Sci Total Environ. 2024. PMID: 38296085
Correlative analysis of wastewater trends with clinical cases and hospitalizations through five dominant variant waves of COVID-19.
Zhan Q, Solo-Gabriele HM, Sharkey ME, Amirali A, Beaver CC, Boone MM, Comerford S, Cooper D, Cortizas EM, Cosculluela GA, Currall BB, Grills GS, Kobetz E, Kumar N, Laine J, Lamar WE, Lyu J, Mason CE, Reding BD, Roca MA, Schürer SC, Shukla BS, Solle NS, Suarez MM, Stevenson M, Tallon JJ Jr, Thomas C, Vidović D, Williams SL, Yin X, Zarnegarnia Y, Babler KM. Zhan Q, et al. Among authors: reding bd. ACS ES T Water. 2023 Sep 8;3(9):2849-2862. doi: 10.1021/acsestwater.3c00032. Epub 2023 Aug 22. ACS ES T Water. 2023. PMID: 38487696