Reddington JP - Search Results

1

scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation.

Heinen T, Secchia S, Reddington JP, Zhao B, Furlong EEM, Stegle O. Heinen T, et al. Among authors: reddington jp. Genome Biol. 2022 Jan 6;23(1):8. doi: 10.1186/s13059-021-02593-8. Genome Biol. 2022. PMID: 34991671 Free PMC article.

2

The cis-regulatory dynamics of embryonic development at single-cell resolution.

Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. Cusanovich DA, et al. Among authors: reddington jp. Nature. 2018 Mar 22;555(7697):538-542. doi: 10.1038/nature25981. Epub 2018 Mar 14. Nature. 2018. PMID: 29539636 Free PMC article.

3

The Role of Chromatin Accessibility in cis-Regulatory Evolution.

Peng PC, Khoueiry P, Girardot C, Reddington JP, Garfield DA, Furlong EEM, Sinha S. Peng PC, et al. Among authors: reddington jp. Genome Biol Evol. 2019 Jul 1;11(7):1813-1828. doi: 10.1093/gbe/evz103. Genome Biol Evol. 2019. PMID: 31114856 Free PMC article.

4

Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis.

Reddington JP, Garfield DA, Sigalova OM, Karabacak Calviello A, Marco-Ferreres R, Girardot C, Viales RR, Degner JF, Ohler U, Furlong EEM. Reddington JP, et al. Dev Cell. 2020 Dec 7;55(5):648-664.e9. doi: 10.1016/j.devcel.2020.10.009. Epub 2020 Nov 9. Dev Cell. 2020. PMID: 33171098 Free article.

5

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection.

Liu J, Viales RR, Khoueiry P, Reddington JP, Girardot C, Furlong EEM, Robinson-Rechavi M. Liu J, et al. Among authors: reddington jp. Genome Res. 2021 Sep;31(9):1573-1581. doi: 10.1101/gr.275212.121. Epub 2021 Jul 15. Genome Res. 2021. PMID: 34266978 Free PMC article.

6

Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes.

Nestor CE, Ottaviano R, Reddington J, Sproul D, Reinhardt D, Dunican D, Katz E, Dixon JM, Harrison DJ, Meehan RR. Nestor CE, et al. Genome Res. 2012 Mar;22(3):467-77. doi: 10.1101/gr.126417.111. Epub 2011 Nov 21. Genome Res. 2012. PMID: 22106369 Free PMC article.

7

Putting muscle in DNA methylation.

Reddington JP, Meehan RR. Reddington JP, et al. Cell Res. 2011 Nov;21(11):1531-3. doi: 10.1038/cr.2011.91. Epub 2011 May 31. Cell Res. 2011. PMID: 21625268 Free PMC article. No abstract available.

8

Investigating 5-hydroxymethylcytosine (5hmC): the state of the art.

Nestor CE, Reddington JP, Benson M, Meehan RR. Nestor CE, et al. Among authors: reddington jp. Methods Mol Biol. 2014;1094:243-58. doi: 10.1007/978-1-62703-706-8_19. Methods Mol Biol. 2014. PMID: 24162993 Review.

9

The interaction of xKaiso with xTcf3: a revised model for integration of epigenetic and Wnt signalling pathways.

Ruzov A, Hackett JA, Prokhortchouk A, Reddington JP, Madej MJ, Dunican DS, Prokhortchouk E, Pennings S, Meehan RR. Ruzov A, et al. Among authors: reddington jp. Development. 2009 Mar;136(5):723-7. doi: 10.1242/dev.025577. Epub 2009 Jan 21. Development. 2009. PMID: 19158184 Free PMC article.

10

Promoter DNA methylation couples genome-defence mechanisms to epigenetic reprogramming in the mouse germline.

Hackett JA, Reddington JP, Nestor CE, Dunican DS, Branco MR, Reichmann J, Reik W, Surani MA, Adams IR, Meehan RR. Hackett JA, et al. Among authors: reddington jp. Development. 2012 Oct;139(19):3623-32. doi: 10.1242/dev.081661. Development. 2012. PMID: 22949617 Free PMC article.

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