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Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.
Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW Jr, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabaldón T, Paten B, Ray DA. Green RE, et al. Among authors: ray da. Science. 2014 Dec 12;346(6215):1254449. doi: 10.1126/science.1254449. Epub 2014 Dec 11. Science. 2014. PMID: 25504731 Free PMC article.
Analysis of the human Alu Ye lineage.
Salem AH, Ray DA, Hedges DJ, Jurka J, Batzer MA. Salem AH, et al. Among authors: ray da. BMC Evol Biol. 2005 Feb 22;5:18. doi: 10.1186/1471-2148-5-18. BMC Evol Biol. 2005. PMID: 15725352 Free PMC article.
SINEs, evolution and genome structure in the opossum.
Gu W, Ray DA, Walker JA, Barnes EW, Gentles AJ, Samollow PB, Jurka J, Batzer MA, Pollock DD. Gu W, et al. Among authors: ray da. Gene. 2007 Jul 1;396(1):46-58. doi: 10.1016/j.gene.2007.02.028. Epub 2007 Mar 19. Gene. 2007. PMID: 17442506
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.
Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC; Broad Institute Genome Sequencing Platform; Broad Institute Whole Genome Assembly Team; Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K. Mikkelsen TS, et al. Among authors: ray da. Nature. 2007 May 10;447(7141):167-77. doi: 10.1038/nature05805. Nature. 2007. PMID: 17495919
Reading between the LINEs to see into the past.
Ray DA, Platt RN, Batzer MA. Ray DA, et al. Trends Genet. 2009 Nov;25(11):475-9. doi: 10.1016/j.tig.2009.09.006. Trends Genet. 2009. PMID: 19837475 Free PMC article.
Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes.
Castoe TA, de Koning JA, Hall KT, Yokoyama KD, Gu W, Smith EN, Feschotte C, Uetz P, Ray DA, Dobry J, Bogden R, Mackessy SP, Bronikowski AM, Warren WC, Secor SM, Pollock DD. Castoe TA, et al. Among authors: ray da. Genome Biol. 2011 Jul 28;12(7):406. doi: 10.1186/gb-2011-12-7-406. Genome Biol. 2011. PMID: 21801464 Free PMC article.
138 results