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Examining DNA Breathing with pyDNA-EPBD.
Kabir A, Bhattarai M, Rasmussen KØ, Shehu A, Usheva A, Bishop AR, Alexandrov BS. Kabir A, et al. Among authors: rasmussen ko. bioRxiv [Preprint]. 2023 Sep 12:2023.09.09.557010. doi: 10.1101/2023.09.09.557010. bioRxiv. 2023. PMID: 37745370 Free PMC article. Updated. Preprint.
Twisted localized modes.
Kevrekidis PG, Bishop AR, Rasmussen KØ. Kevrekidis PG, et al. Among authors: rasmussen ko. Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Mar;63(3 Pt 2):036603. doi: 10.1103/PhysRevE.63.036603. Epub 2001 Feb 20. Phys Rev E Stat Nonlin Soft Matter Phys. 2001. PMID: 11308784
DNA dynamically directs its own transcription initiation.
Choi CH, Kalosakas G, Rasmussen KO, Hiromura M, Bishop AR, Usheva A. Choi CH, et al. Among authors: rasmussen ko. Nucleic Acids Res. 2004 Mar 5;32(4):1584-90. doi: 10.1093/nar/gkh335. Print 2004. Nucleic Acids Res. 2004. PMID: 15004245 Free PMC article.
Bubble nucleation and cooperativity in DNA melting.
Ares S, Voulgarakis NK, Rasmussen KO, Bishop AR. Ares S, et al. Among authors: rasmussen ko. Phys Rev Lett. 2005 Jan 28;94(3):035504. doi: 10.1103/PhysRevLett.94.035504. Epub 2005 Jan 27. Phys Rev Lett. 2005. PMID: 15698282
ac conductivity in a DNA charge transport model.
Maniadis P, Kalosakas G, Rasmussen KO, Bishop AR. Maniadis P, et al. Among authors: rasmussen ko. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Aug;72(2 Pt 1):021912. doi: 10.1103/PhysRevE.72.021912. Epub 2005 Aug 29. Phys Rev E Stat Nonlin Soft Matter Phys. 2005. PMID: 16196609
Healing length and bubble formation in DNA.
Rapti Z, Smerzi A, Rasmussen KO, Bishop AR, Choi CH, Usheva A. Rapti Z, et al. Among authors: rasmussen ko. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 May;73(5 Pt 1):051902. doi: 10.1103/PhysRevE.73.051902. Epub 2006 May 4. Phys Rev E Stat Nonlin Soft Matter Phys. 2006. PMID: 16802962
64 results