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Complex Portal 2022: new curation frontiers.
Meldal BHM, Perfetto L, Combe C, Lubiana T, Ferreira Cavalcante JV, Bye-A-Jee H, Waagmeester A, Del-Toro N, Shrivastava A, Barrera E, Wong E, Mlecnik B, Bindea G, Panneerselvam K, Willighagen E, Rappsilber J, Porras P, Hermjakob H, Orchard S. Meldal BHM, et al. Among authors: rappsilber j. Nucleic Acids Res. 2022 Jan 7;50(D1):D578-D586. doi: 10.1093/nar/gkab991. Nucleic Acids Res. 2022. PMID: 34718729 Free PMC article.
xiNET: cross-link network maps with residue resolution.
Combe CW, Fischer L, Rappsilber J. Combe CW, et al. Among authors: rappsilber j. Mol Cell Proteomics. 2015 Apr;14(4):1137-47. doi: 10.1074/mcp.O114.042259. Epub 2015 Feb 3. Mol Cell Proteomics. 2015. PMID: 25648531 Free PMC article.
ComplexViewer: visualization of curated macromolecular complexes.
Combe CW, Sivade MD, Hermjakob H, Heimbach J, Meldal BHM, Micklem G, Orchard S, Rappsilber J. Combe CW, et al. Among authors: rappsilber j. Bioinformatics. 2017 Nov 15;33(22):3673-3675. doi: 10.1093/bioinformatics/btx497. Bioinformatics. 2017. PMID: 29036573 Free PMC article.
JAMI: a Java library for molecular interactions and data interoperability.
Sivade Dumousseau M, Koch M, Shrivastava A, Alonso-López D, De Las Rivas J, Del-Toro N, Combe CW, Meldal BHM, Heimbach J, Rappsilber J, Sullivan J, Yehudi Y, Orchard S. Sivade Dumousseau M, et al. Among authors: rappsilber j. BMC Bioinformatics. 2018 Apr 11;19(1):133. doi: 10.1186/s12859-018-2119-0. BMC Bioinformatics. 2018. PMID: 29642846 Free PMC article.
The IntAct database: efficient access to fine-grained molecular interaction data.
Del Toro N, Shrivastava A, Ragueneau E, Meldal B, Combe C, Barrera E, Perfetto L, How K, Ratan P, Shirodkar G, Lu O, Mészáros B, Watkins X, Pundir S, Licata L, Iannuccelli M, Pellegrini M, Martin MJ, Panni S, Duesbury M, Vallet SD, Rappsilber J, Ricard-Blum S, Cesareni G, Salwinski L, Orchard S, Porras P, Panneerselvam K, Hermjakob H. Del Toro N, et al. Among authors: rappsilber j. Nucleic Acids Res. 2022 Jan 7;50(D1):D648-D653. doi: 10.1093/nar/gkab1006. Nucleic Acids Res. 2022. PMID: 34761267 Free PMC article.
An open invitation to the Understudied Proteins Initiative.
Kustatscher G, Collins T, Gingras AC, Guo T, Hermjakob H, Ideker T, Lilley KS, Lundberg E, Marcotte EM, Ralser M, Rappsilber J. Kustatscher G, et al. Among authors: rappsilber j. Nat Biotechnol. 2022 Jun;40(6):815-817. doi: 10.1038/s41587-022-01316-z. Nat Biotechnol. 2022. PMID: 35534555 No abstract available.
Understudied proteins: opportunities and challenges for functional proteomics.
Kustatscher G, Collins T, Gingras AC, Guo T, Hermjakob H, Ideker T, Lilley KS, Lundberg E, Marcotte EM, Ralser M, Rappsilber J. Kustatscher G, et al. Among authors: rappsilber j. Nat Methods. 2022 Jul;19(7):774-779. doi: 10.1038/s41592-022-01454-x. Nat Methods. 2022. PMID: 35534633 No abstract available.
Genetic code expansion for multiprotein complex engineering.
Koehler C, Sauter PF, Wawryszyn M, Girona GE, Gupta K, Landry JJ, Fritz MH, Radic K, Hoffmann JE, Chen ZA, Zou J, Tan PS, Galik B, Junttila S, Stolt-Bergner P, Pruneri G, Gyenesei A, Schultz C, Biskup MB, Besir H, Benes V, Rappsilber J, Jechlinger M, Korbel JO, Berger I, Braese S, Lemke EA. Koehler C, et al. Among authors: rappsilber j. Nat Methods. 2016 Dec;13(12):997-1000. doi: 10.1038/nmeth.4032. Epub 2016 Oct 17. Nat Methods. 2016. PMID: 27749839
An integrated workflow for crosslinking mass spectrometry.
Mendes ML, Fischer L, Chen ZA, Barbon M, O'Reilly FJ, Giese SH, Bohlke-Schneider M, Belsom A, Dau T, Combe CW, Graham M, Eisele MR, Baumeister W, Speck C, Rappsilber J. Mendes ML, et al. Among authors: rappsilber j. Mol Syst Biol. 2019 Sep;15(9):e8994. doi: 10.15252/msb.20198994. Mol Syst Biol. 2019. PMID: 31556486 Free PMC article.
300 results