Raphael BJ - Search Results

1

Inferring parsimonious migration histories for metastatic cancers.

El-Kebir M, Satas G, Raphael BJ. El-Kebir M, et al. Among authors: raphael bj. Nat Genet. 2018 May;50(5):718-726. doi: 10.1038/s41588-018-0106-z. Epub 2018 Apr 26. Nat Genet. 2018. PMID: 29700472 Free PMC article.

2

Mutational landscape and significance across 12 major cancer types.

Kandoth C, McLellan MD, Vandin F, Ye K, Niu B, Lu C, Xie M, Zhang Q, McMichael JF, Wyczalkowski MA, Leiserson MDM, Miller CA, Welch JS, Walter MJ, Wendl MC, Ley TJ, Wilson RK, Raphael BJ, Ding L. Kandoth C, et al. Among authors: raphael bj. Nature. 2013 Oct 17;502(7471):333-339. doi: 10.1038/nature12634. Nature. 2013. PMID: 24132290 Free PMC article.

3

Making connections: using networks to stratify human tumors.

Raphael BJ. Raphael BJ. Nat Methods. 2013 Nov;10(11):1077-8. doi: 10.1038/nmeth.2704. Nat Methods. 2013. PMID: 24173383 No abstract available.

4

A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data.

Hajirasouliha I, Mahmoody A, Raphael BJ. Hajirasouliha I, et al. Among authors: raphael bj. Bioinformatics. 2014 Jun 15;30(12):i78-86. doi: 10.1093/bioinformatics/btu284. Bioinformatics. 2014. PMID: 24932008 Free PMC article.

5

Expanding the computational toolbox for mining cancer genomes.

Ding L, Wendl MC, McMichael JF, Raphael BJ. Ding L, et al. Among authors: raphael bj. Nat Rev Genet. 2014 Aug;15(8):556-70. doi: 10.1038/nrg3767. Epub 2014 Jul 8. Nat Rev Genet. 2014. PMID: 25001846 Free PMC article. Review.

6

Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data.

Oesper L, Satas G, Raphael BJ. Oesper L, et al. Among authors: raphael bj. Bioinformatics. 2014 Dec 15;30(24):3532-40. doi: 10.1093/bioinformatics/btu651. Epub 2014 Oct 8. Bioinformatics. 2014. PMID: 25297070 Free PMC article.

7

Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes.

Leiserson MD, Vandin F, Wu HT, Dobson JR, Eldridge JV, Thomas JL, Papoutsaki A, Kim Y, Niu B, McLellan M, Lawrence MS, Gonzalez-Perez A, Tamborero D, Cheng Y, Ryslik GA, Lopez-Bigas N, Getz G, Ding L, Raphael BJ. Leiserson MD, et al. Among authors: raphael bj. Nat Genet. 2015 Feb;47(2):106-14. doi: 10.1038/ng.3168. Epub 2014 Dec 15. Nat Genet. 2015. PMID: 25501392 Free PMC article.

8

MAGI: visualization and collaborative annotation of genomic aberrations.

Leiserson MD, Gramazio CC, Hu J, Wu HT, Laidlaw DH, Raphael BJ. Leiserson MD, et al. Among authors: raphael bj. Nat Methods. 2015 Jun;12(6):483-4. doi: 10.1038/nmeth.3412. Nat Methods. 2015. PMID: 26020500 No abstract available.

9

Reconstruction of clonal trees and tumor composition from multi-sample sequencing data.

El-Kebir M, Oesper L, Acheson-Field H, Raphael BJ. El-Kebir M, et al. Among authors: raphael bj. Bioinformatics. 2015 Jun 15;31(12):i62-70. doi: 10.1093/bioinformatics/btv261. Bioinformatics. 2015. PMID: 26072510 Free PMC article.

10

Reply: Co-occurrence of MYC amplification and TP53 mutations in human cancer.

Leiserson MD, Vandin F, Wu HT, Raphael BJ. Leiserson MD, et al. Among authors: raphael bj. Nat Genet. 2016 Feb;48(2):106-8. doi: 10.1038/ng.3491. Nat Genet. 2016. PMID: 26813760 No abstract available.

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