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H&E image analysis pipeline for quantifying morphological features.
Ariotta V, Lehtonen O, Salloum S, Micoli G, Lavikka K, Rantanen V, Hynninen J, Virtanen A, Hautaniemi S. Ariotta V, et al. Among authors: rantanen v. J Pathol Inform. 2023 Oct 5;14:100339. doi: 10.1016/j.jpi.2023.100339. eCollection 2023. J Pathol Inform. 2023. PMID: 37915837 Free PMC article.
Agile workflow for interactive analysis of mass cytometry data.
Casado J, Lehtonen O, Rantanen V, Kaipio K, Pasquini L, Häkkinen A, Petrucci E, Hynninen J, Hietanen S, Carpén O, Biffoni M, Färkkilä A, Hautaniemi S. Casado J, et al. Among authors: rantanen v. Bioinformatics. 2021 Jun 9;37(9):1263-1268. doi: 10.1093/bioinformatics/btaa946. Bioinformatics. 2021. PMID: 33135052 Free PMC article.
Anduril 2: upgraded large-scale data integration framework.
Cervera A, Rantanen V, Ovaska K, Laakso M, Nuñez-Fontarnau J, Alkodsi A, Casado J, Facciotto C, Häkkinen A, Louhimo R, Karinen S, Zhang K, Lavikka K, Lyly L, Pal Singh M, Hautaniemi S. Cervera A, et al. Among authors: rantanen v. Bioinformatics. 2019 Oct 1;35(19):3815-3817. doi: 10.1093/bioinformatics/btz133. Bioinformatics. 2019. PMID: 30793160
FUNGI: FUsioN Gene Integration toolset.
Cervera A, Rausio H, Kähkönen T, Andersson N, Partel G, Rantanen V, Paciello G, Ficarra E, Hynninen J, Hietanen S, Carpén O, Lehtonen R, Hautaniemi S, Huhtinen K. Cervera A, et al. Among authors: rantanen v. Bioinformatics. 2021 Oct 11;37(19):3353-3355. doi: 10.1093/bioinformatics/btab206. Bioinformatics. 2021. PMID: 33772596 Free PMC article.
95 results