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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Brief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232.
Brief Bioinform. 2021.
PMID: 33147627
Free PMC article.
Review.
Computational Tools for the Analysis of Uncultivated Phage Genomes.
Andrade-Martínez JS, Camelo Valera LC, Chica Cárdenas LA, Forero-Junco L, López-Leal G, Moreno-Gallego JL, Rangel-Pineros G, Reyes A.
Andrade-Martínez JS, et al. Among authors: rangel pineros g.
Microbiol Mol Biol Rev. 2022 Jun 15;86(2):e0000421. doi: 10.1128/mmbr.00004-21. Epub 2022 Mar 21.
Microbiol Mol Biol Rev. 2022.
PMID: 35311574
Free PMC article.
Review.
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Massive expansion of human gut bacteriophage diversity.
Camarillo-Guerrero LF, Almeida A, Rangel-Pineros G, Finn RD, Lawley TD.
Camarillo-Guerrero LF, et al. Among authors: rangel pineros g.
Cell. 2021 Feb 18;184(4):1098-1109.e9. doi: 10.1016/j.cell.2021.01.029.
Cell. 2021.
PMID: 33606979
Free PMC article.
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From Trees to Clouds: PhageClouds for Fast Comparison of ∼640,000 Phage Genomic Sequences and Host-Centric Visualization Using Genomic Network Graphs.
Rangel-Pineros G, Millard A, Michniewski S, Scanlan D, Sirén K, Reyes A, Petersen B, Clokie MRJ, Sicheritz-Pontén T.
Rangel-Pineros G, et al.
Phage (New Rochelle). 2021 Dec 1;2(4):194-203. doi: 10.1089/phage.2021.0008. Epub 2021 Dec 16.
Phage (New Rochelle). 2021.
PMID: 36147515
Free PMC article.
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inPhocus: "Virus Amigos?" The Journey of the Development of Phage-Based Biocontrol in the Latin American Poultry and Aquaculture Industries.
Rangel-Pineros G, Sicheritz-Pontén T, Clokie MRJ.
Rangel-Pineros G, et al.
Phage (New Rochelle). 2021 Mar 1;2(1):3-6. doi: 10.1089/phage.2021.29012.grp. Epub 2021 Mar 17.
Phage (New Rochelle). 2021.
PMID: 36148440
Free PMC article.
No abstract available.
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Methylation Warfare: Interaction of Pneumococcal Bacteriophages with Their Host.
Furi L, Crawford LA, Rangel-Pineros G, Manso AS, De Ste Croix M, Haigh RD, Kwun MJ, Engelsen Fjelland K, Gilfillan GD, Bentley SD, Croucher NJ, Clokie MR, Oggioni MR.
Furi L, et al. Among authors: rangel pineros g.
J Bacteriol. 2019 Sep 6;201(19):e00370-19. doi: 10.1128/JB.00370-19. Print 2019 Oct 1.
J Bacteriol. 2019.
PMID: 31285240
Free PMC article.
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VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
Rangel-Pineros G, Almeida A, Beracochea M, Sakharova E, Marz M, Reyes Muñoz A, Hölzer M, Finn RD.
Rangel-Pineros G, et al.
PLoS Comput Biol. 2023 Aug 28;19(8):e1011422. doi: 10.1371/journal.pcbi.1011422. eCollection 2023 Aug.
PLoS Comput Biol. 2023.
PMID: 37639475
Free PMC article.
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