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PathBank 2.0-the pathway database for model organism metabolomics.
Wishart DS, Kruger R, Sivakumaran A, Harford K, Sanford S, Doshi R, Kehrtarpal N, Fatokun O, Doucet D, Zubkowski A, Jackson H, Sykes G, Ramirez-Gaona M, Marcu A, Li C, Yee K, Garros C, Rayat DY, Coleongco J, Nandyala T, Gautam V, Oler E. Wishart DS, et al. Among authors: ramirez gaona m. Nucleic Acids Res. 2024 Jan 5;52(D1):D654-D662. doi: 10.1093/nar/gkad1041. Nucleic Acids Res. 2024. PMID: 37962386 Free PMC article.
Mutation of PUB17 in tomato leads to reduced susceptibility to necrotrophic fungi.
Ramirez Gaona M, van Tuinen A, Schipper D, Kano A, Wolters PJ, Visser RGF, van Kan JAL, Wolters AA, Bai Y. Ramirez Gaona M, et al. Plant Biotechnol J. 2023 Nov;21(11):2157-2159. doi: 10.1111/pbi.14127. Epub 2023 Sep 21. Plant Biotechnol J. 2023. PMID: 37735839 Free PMC article. No abstract available.
PathBank: a comprehensive pathway database for model organisms.
Wishart DS, Li C, Marcu A, Badran H, Pon A, Budinski Z, Patron J, Lipton D, Cao X, Oler E, Li K, Paccoud M, Hong C, Guo AC, Chan C, Wei W, Ramirez-Gaona M. Wishart DS, et al. Among authors: ramirez gaona m. Nucleic Acids Res. 2020 Jan 8;48(D1):D470-D478. doi: 10.1093/nar/gkz861. Nucleic Acids Res. 2020. PMID: 31602464 Free PMC article.
YMDB 2.0: a significantly expanded version of the yeast metabolome database.
Ramirez-Gaona M, Marcu A, Pon A, Guo AC, Sajed T, Wishart NA, Karu N, Djoumbou Feunang Y, Arndt D, Wishart DS. Ramirez-Gaona M, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D440-D445. doi: 10.1093/nar/gkw1058. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899612 Free PMC article.
Cancer Metabolomics and the Human Metabolome Database.
Wishart DS, Mandal R, Stanislaus A, Ramirez-Gaona M. Wishart DS, et al. Among authors: ramirez gaona m. Metabolites. 2016 Mar 2;6(1):10. doi: 10.3390/metabo6010010. Metabolites. 2016. PMID: 26950159 Free PMC article. Review.
Cell-free mitochondrial DNA in CSF is associated with early viral rebound, inflammation, and severity of neurocognitive deficits in HIV infection.
Pérez-Santiago J, Schrier RD, de Oliveira MF, Gianella S, Var SR, Day TR, Ramirez-Gaona M, Suben JD, Murrell B, Massanella M, Cherner M, Smith DM, Ellis RJ, Letendre SL, Mehta SR. Pérez-Santiago J, et al. Among authors: ramirez gaona m. J Neurovirol. 2016 Apr;22(2):191-200. doi: 10.1007/s13365-015-0384-5. Epub 2015 Oct 1. J Neurovirol. 2016. PMID: 26428514 Free PMC article.