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Similar But Different: Integrated Phylogenetic Analysis of Austrian and Swiss HIV-1 Sequences Reveal Differences in Transmission Patterns of the Local HIV-1 Epidemics.
Kusejko K, Tschumi N, Chaudron SE, Nguyen H, Battegay M, Bernasconi E, Böni J, Huber M, Calmy A, Cavassini M, Egle A, Grabmeier-Pfistershammer K, Haas B, Hirsch H, Klimkait T, Öllinger A, Perreau M, Ramette A, Flury BB, Sarcletti M, Scherrer A, Schmid P, Yerly S, Zangerle R, Günthard HF, Kouyos RD; Swiss HIV Cohort Study and the Austrian HIV Cohort Study. Kusejko K, et al. Among authors: ramette a. J Acquir Immune Defic Syndr. 2022 Aug 1;90(4):e4-e12. doi: 10.1097/QAI.0000000000002949. J Acquir Immune Defic Syndr. 2022. PMID: 35298446 Free PMC article.
Phylogenetic Cluster Analysis Identifies Virological and Behavioral Drivers of Human Immunodeficiency Virus Transmission in Men Who Have Sex With Men.
Bachmann N, Kusejko K, Nguyen H, Chaudron SE, Kadelka C, Turk T, Böni J, Perreau M, Klimkait T, Yerly S, Battegay M, Rauch A, Ramette A, Vernazza P, Bernasconi E, Cavassini M, Günthard HF, Kouyos RD; Swiss HIV Cohort Study. Bachmann N, et al. Among authors: ramette a. Clin Infect Dis. 2021 Jun 15;72(12):2175-2183. doi: 10.1093/cid/ciaa411. Clin Infect Dis. 2021. PMID: 32300807 Free article.
Using longitudinally sampled viral nucleotide sequences to characterize the drivers of HIV-1 transmission.
Reichmuth ML, Chaudron SE, Bachmann N, Nguyen H, Böni J, Metzner KJ, Perreau M, Klimkait T, Yerly S, Hirsch HH, Hauser C, Ramette A, Vernazza P, Cavassini M, Bernasconi E, Günthard HF, Kusejko K, Kouyos RD; Swiss HIV Cohort Study. Reichmuth ML, et al. Among authors: ramette a. HIV Med. 2021 May;22(5):346-359. doi: 10.1111/hiv.13030. Epub 2020 Dec 25. HIV Med. 2021. PMID: 33368946 Free article.
SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing.
Goncalves Cabecinhas AR, Roloff T, Stange M, Bertelli C, Huber M, Ramette A, Chen C, Nadeau S, Gerth Y, Yerly S, Opota O, Pillonel T, Schuster T, Metzger CMJA, Sieber J, Bel M, Wohlwend N, Baumann C, Koch MC, Bittel P, Leuzinger K, Brunner M, Suter-Riniker F, Berlinger L, Søgaard KK, Beckmann C, Noppen C, Redondo M, Steffen I, Seth-Smith HMB, Mari A, Lienhard R, Risch M, Nolte O, Eckerle I, Martinetti Lucchini G, Hodcroft EB, Neher RA, Stadler T, Hirsch HH, Leib SL, Risch L, Kaiser L, Trkola A, Greub G, Egli A. Goncalves Cabecinhas AR, et al. Among authors: ramette a. Microorganisms. 2021 Mar 25;9(4):677. doi: 10.3390/microorganisms9040677. Microorganisms. 2021. PMID: 33806013 Free PMC article.
Increasing Frequency and Transmission of HIV-1 Non-B Subtypes Among Men Who Have Sex With Men in the Swiss HIV Cohort Study.
Duran Ramirez JJ, Ballouz T, Nguyen H, Kusejko K, Chaudron SE, Huber M, Hirsch HH, Perreau M, Ramette A, Yerly S, Cavassini M, Stöckle M, Furrer H, Vernazza P, Bernasconi E, Günthard HF, Kouyos RD; Swiss HIV Cohort Study. Duran Ramirez JJ, et al. Among authors: ramette a. J Infect Dis. 2022 Jan 18;225(2):306-316. doi: 10.1093/infdis/jiab360. J Infect Dis. 2022. PMID: 34260728 Free article.
Identifying and Characterizing Trans Women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group.
Nguyen H, Hampel B, Garcia Nuñez D, Battegay M, Hachfeld A, Bernasconi E, Calmy A, Cavassini M, Vernazza P, Fellay J, Rudolph H, Huber M, Leuzinger K, Perreau M, Scherrer A, Ramette AN, Yerly S, Günthard HF, Kouyos RD, Kusejko K; Swiss HIV Cohort Study. Nguyen H, et al. Among authors: ramette an. Clin Infect Dis. 2022 Apr 28;74(8):1468-1475. doi: 10.1093/cid/ciab628. Clin Infect Dis. 2022. PMID: 34282827 Free PMC article.
Correction to: Identifying and Characterizing Trans Women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group.
Nguyen H, Hampel B, Nuñez DG, Battegay M, Hachfeld A, Bernasconi E, Calmy A, Cavassini M, Vernazza P, Fellay J, Rudolph H, Huber M, Leuzinger K, Perreau M, Scherrer A, Ramette AN, Yerly S, Günthard HF, Kouyos RD, Kusejko K. Nguyen H, et al. Among authors: ramette an. Clin Infect Dis. 2022 Jul 6;74(12):2266. doi: 10.1093/cid/ciac242. Clin Infect Dis. 2022. PMID: 35482552 Free PMC article. No abstract available.
A Systematic Molecular Epidemiology Screen Reveals Numerous Human Immunodeficiency Virus (HIV) Type 1 Superinfections in the Swiss HIV Cohort Study.
Chaudron SE, Leemann C, Kusejko K, Nguyen H, Tschumi N, Marzel A, Huber M, Böni J, Perreau M, Klimkait T, Yerly S, Ramette A, Hirsch HH, Rauch A, Calmy A, Vernazza P, Bernasconi E, Cavassini M, Metzner KJ, Kouyos RD, Günthard HF; Swiss HIV Cohort Study. Chaudron SE, et al. Among authors: ramette a. J Infect Dis. 2022 Sep 28;226(7):1256-1266. doi: 10.1093/infdis/jiac166. J Infect Dis. 2022. PMID: 35485458 Free article.
Quantifying and Predicting Ongoing Human Immunodeficiency Virus Type 1 Transmission Dynamics in Switzerland Using a Distance-Based Clustering Approach.
Labarile M, Loosli T, Zeeb M, Kusejko K, Huber M, Hirsch HH, Perreau M, Ramette A, Yerly S, Cavassini M, Battegay M, Rauch A, Calmy A, Notter J, Bernasconi E, Fux C, Günthard HF, Pasin C, Kouyos RD; Swiss HIV Cohort Study. Labarile M, et al. Among authors: ramette a. J Infect Dis. 2023 Feb 14;227(4):554-564. doi: 10.1093/infdis/jiac457. J Infect Dis. 2023. PMID: 36433831 Free article.
Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1.
Balakrishna S, Loosli T, Zaheri M, Frischknecht P, Huber M, Kusejko K, Yerly S, Leuzinger K, Perreau M, Ramette A, Wymant C, Fraser C, Kellam P, Gall A, Hirsch HH, Stoeckle M, Rauch A, Cavassini M, Bernasconi E, Notter J, Calmy A, Günthard HF, Metzner KJ, Kouyos RD. Balakrishna S, et al. Among authors: ramette a. J Antimicrob Chemother. 2023 Mar 2;78(3):656-664. doi: 10.1093/jac/dkac430. J Antimicrob Chemother. 2023. PMID: 36738248
118 results