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The co-evolution of the genome and epigenome in colorectal cancer.
Heide T, Househam J, Cresswell GD, Spiteri I, Lynn C, Mossner M, Kimberley C, Fernandez-Mateos J, Chen B, Zapata L, James C, Barozzi I, Chkhaidze K, Nichol D, Gunasri V, Berner A, Schmidt M, Lakatos E, Baker AM, Costa H, Mitchinson M, Piazza R, Jansen M, Caravagna G, Ramazzotti D, Shibata D, Bridgewater J, Rodriguez-Justo M, Magnani L, Graham TA, Sottoriva A. Heide T, et al. Among authors: ramazzotti d. Nature. 2022 Nov;611(7937):733-743. doi: 10.1038/s41586-022-05202-1. Epub 2022 Oct 26. Nature. 2022. PMID: 36289335 Free PMC article.
Inferring tree causal models of cancer progression with probability raising.
Olde Loohuis L, Caravagna G, Graudenzi A, Ramazzotti D, Mauri G, Antoniotti M, Mishra B. Olde Loohuis L, et al. Among authors: ramazzotti d. PLoS One. 2014 Oct 9;9(10):e108358. doi: 10.1371/journal.pone.0108358. eCollection 2014. PLoS One. 2014. PMID: 25299648 Free PMC article.
Algorithmic methods to infer the evolutionary trajectories in cancer progression.
Caravagna G, Graudenzi A, Ramazzotti D, Sanz-Pamplona R, De Sano L, Mauri G, Moreno V, Antoniotti M, Mishra B. Caravagna G, et al. Among authors: ramazzotti d. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):E4025-34. doi: 10.1073/pnas.1520213113. Epub 2016 Jun 28. Proc Natl Acad Sci U S A. 2016. PMID: 27357673 Free PMC article.
Detecting repeated cancer evolution from multi-region tumor sequencing data.
Caravagna G, Giarratano Y, Ramazzotti D, Tomlinson I, Graham TA, Sanguinetti G, Sottoriva A. Caravagna G, et al. Among authors: ramazzotti d. Nat Methods. 2018 Sep;15(9):707-714. doi: 10.1038/s41592-018-0108-x. Epub 2018 Aug 31. Nat Methods. 2018. PMID: 30171232 Free PMC article.
46 results