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Trio RNA sequencing in a cohort of medically complex children.
Deshwar AR, Yuki KE, Hou H, Liang Y, Khan T, Celik A, Ramani A, Mendoza-Londono R, Marshall CR, Brudno M, Shlien A, Meyn MS, Hayeems RZ, McKinlay BJ, Klentrou P, Wilson MD, Kyriakopoulou L, Costain G, Dowling JJ. Deshwar AR, et al. Among authors: ramani a. Am J Hum Genet. 2023 May 4;110(5):895-900. doi: 10.1016/j.ajhg.2023.03.006. Epub 2023 Mar 28. Am J Hum Genet. 2023. PMID: 36990084 Free PMC article.
Bridging clinical care and research in Ontario, Canada: Maximizing diagnoses from reanalysis of clinical exome sequencing data.
Hartley T, Soubry É, Acker M, Osmond M, Couse M, Gillespie MK, Ito Y, Marshall AE, Lemire G, Huang L, Chisholm C, Eaton AJ, Price EM, Dowling JJ, Ramani AK, Mendoza-Londono R, Costain G, Axford MM, Szuto A, McNiven V, Damseh N, Jobling R, de Kock L, Mojarad BA, Young T, Shao Z, Hayeems RZ, Graham ID, Tarnopolsky M, Brady L, Armour CM, Geraghty M, Richer J, Sawyer S, Lines M, Mercimek-Andrews S, Carter MT, Graham G, Kannu P, Lazier J, Li C, Aul RB, Balci TB, Dlamini N, Badalato L, Guerin A, Walia J, Chitayat D, Cohn R, Faghfoury H, Forster-Gibson C, Gonorazky H, Grunebaum E, Inbar-Feigenberg M, Karp N, Morel C, Rusnak A, Sondheimer N, Warman-Chardon J, Bhola PT, Bourque DK, Chacon IJ, Chad L, Chakraborty P, Chong K, Doja A, Goh ES, Saleh M; Care4Rare Canada; Potter BK, Marshall CR, Dyment DA, Kernohan K, Boycott KM. Hartley T, et al. Among authors: ramani ak. Clin Genet. 2023 Mar;103(3):288-300. doi: 10.1111/cge.14262. Epub 2022 Nov 29. Clin Genet. 2023. PMID: 36353900
Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets.
Mahalanabis A, Turinsky AL, Husić M, Christensen E, Luo P, Naidas A, Brudno M, Pugh T, Ramani AK, Shooshtari P. Mahalanabis A, et al. Among authors: ramani ak. Comput Struct Biotechnol J. 2022 Oct 26;20:6375-6387. doi: 10.1016/j.csbj.2022.10.029. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36420149 Free PMC article.
The clinical utility of integrative genomics in childhood cancer extends beyond targetable mutations.
Villani A, Davidson S, Kanwar N, Lo WW, Li Y, Cohen-Gogo S, Fuligni F, Edward LM, Light N, Layeghifard M, Harripaul R, Waldman L, Gallinger B, Comitani F, Brunga L, Hayes R, Anderson ND, Ramani AK, Yuki KE, Blay S, Johnstone B, Inglese C, Hammad R, Goudie C, Shuen A, Wasserman JD, Venier RE, Eliou M, Lorenti M, Ryan CA, Braga M, Gloven-Brown M, Han J, Montero M, Spatare F, Whitlock JA, Scherer SW, Chun K, Somerville MJ, Hawkins C, Abdelhaleem M, Ramaswamy V, Somers GR, Kyriakopoulou L, Hitzler J, Shago M, Morgenstern DA, Tabori U, Meyn S, Irwin MS, Malkin D, Shlien A. Villani A, et al. Among authors: ramani ak. Nat Cancer. 2023 Feb;4(2):203-221. doi: 10.1038/s43018-022-00474-y. Epub 2022 Dec 30. Nat Cancer. 2023. PMID: 36585449 Free PMC article.
Evaluation of single-cell RNAseq labelling algorithms using cancer datasets.
Christensen E, Luo P, Turinsky A, Husić M, Mahalanabis A, Naidas A, Diaz-Mejia JJ, Brudno M, Pugh T, Ramani A, Shooshtari P. Christensen E, et al. Among authors: ramani a. Brief Bioinform. 2023 Jan 19;24(1):bbac561. doi: 10.1093/bib/bbac561. Brief Bioinform. 2023. PMID: 36585784 Free PMC article.
Whole genome analysis for 163 gRNAs in Cas9-edited mice reveals minimal off-target activity.
Peterson KA, Khalouei S, Hanafi N, Wood JA, Lanza DG, Lintott LG, Willis BJ, Seavitt JR, Braun RE, Dickinson ME, White JK, Lloyd KCK, Heaney JD, Murray SA, Ramani A, Nutter LMJ. Peterson KA, et al. Among authors: ramani a. Commun Biol. 2023 Jun 10;6(1):626. doi: 10.1038/s42003-023-04974-0. Commun Biol. 2023. PMID: 37301944 Free PMC article.
RNAget: an API to securely retrieve RNA quantifications.
Upchurch S, Palumbo E, Adams J, Bujold D, Bourque G, Nedzel J, Graham K, Kagda MS, Assis P, Hitz B, Righi E, Guigó R, Wold BJ; GA4GH RNA-Seq Task Team. Upchurch S, et al. Bioinformatics. 2023 Apr 3;39(4):btad126. doi: 10.1093/bioinformatics/btad126. Bioinformatics. 2023. PMID: 36897015 Free PMC article.
Climate change, malaria and neglected tropical diseases: a scoping review.
Klepac P, Hsieh JL, Ducker CL, Assoum M, Booth M, Byrne I, Dodson S, Martin DL, Turner CMR, van Daalen KR, Abela B, Akamboe J, Alves F, Brooker SJ, Ciceri-Reynolds K, Cole J, Desjardins A, Drakeley C, Ediriweera DS, Ferguson NM, Gabrielli AF, Gahir J, Jain S, John MR, Juma E, Kanayson P, Deribe K, King JD, Kipingu AM, Kiware S, Kolaczinski J, Kulei WJ, Laizer TL, Lal V, Lowe R, Maige JS, Mayer S, McIver L, Mosser JF, Nicholls RS, Nunes-Alves C, Panjwani J, Parameswaran N, Polson K, Radoykova HS, Ramani A, Reimer LJ, Reynolds ZM, Ribeiro I, Robb A, Sanikullah KH, Smith DRM, Shirima GG, Shott JP, Tidman R, Tribe L, Turner J, Vaz Nery S, Velayudhan R, Warusavithana S, Wheeler HS, Yajima A, Abdilleh AR, Hounkpatin B, Wangmo D, Whitty CJM, Campbell-Lendrum D, Hollingsworth TD, Solomon AW, Fall IS. Klepac P, et al. Among authors: ramani a. Trans R Soc Trop Med Hyg. 2024 May 10:trae026. doi: 10.1093/trstmh/trae026. Online ahead of print. Trans R Soc Trop Med Hyg. 2024. PMID: 38724044
193 results