Ramakrishnan N - Search Results

1

Modeling regulatory networks at Virginia Tech.

Allen NA, Calzone L, Chen KC, Ciliberto A, Ramakrishnan N, Shaffer CA, Sible JC, Tyson JJ, Vass MT, Watson LT, Zwolak JW. Allen NA, et al. Among authors: ramakrishnan n. OMICS. 2003 Fall;7(3):285-99. doi: 10.1089/153623103322452404. OMICS. 2003. PMID: 14583117

2

the JigCell model builder and run manager.

Vass M, Allen N, Shaffer CA, Ramakrishnan N, Watson LT, Tyson JJ. Vass M, et al. Among authors: ramakrishnan n. Bioinformatics. 2004 Dec 12;20(18):3680-1. doi: 10.1093/bioinformatics/bth422. Epub 2004 Jul 23. Bioinformatics. 2004. PMID: 15273159

3

The JigCell model builder: a spreadsheet interface for creating biochemical reaction network models.

Vass MT, Shaffer CA, Ramakrishnan N, Watson LT, Tyson JJ. Vass MT, et al. Among authors: ramakrishnan n. IEEE/ACM Trans Comput Biol Bioinform. 2006 Apr-Jun;3(2):155-64. doi: 10.1109/TCBB.2006.27. IEEE/ACM Trans Comput Biol Bioinform. 2006. PMID: 17048401

4

Simultaneously segmenting multiple gene expression time courses by analyzing cluster dynamics.

Tadepalli S, Ramakrishnan N, Watson LT, Mishra B, Helm RF. Tadepalli S, et al. Among authors: ramakrishnan n. J Bioinform Comput Biol. 2009 Apr;7(2):339-56. doi: 10.1142/s0219720009004114. J Bioinform Comput Biol. 2009. PMID: 19340919

5

Reverse engineering dynamic temporal models of biological processes and their relationships.

Ramakrishnan N, Tadepalli S, Watson LT, Helm RF, Antoniotti M, Mishra B. Ramakrishnan N, et al. Proc Natl Acad Sci U S A. 2010 Jul 13;107(28):12511-6. doi: 10.1073/pnas.1006283107. Epub 2010 Jun 22. Proc Natl Acad Sci U S A. 2010. PMID: 20571120 Free PMC article.

6

Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine.

Watkinson JI, Sioson AA, Vasquez-Robinet C, Shukla M, Kumar D, Ellis M, Heath LS, Ramakrishnan N, Chevone B, Watson LT, van Zyl L, Egertsdotter U, Sederoff RR, Grene R. Watkinson JI, et al. Among authors: ramakrishnan n. Plant Physiol. 2003 Dec;133(4):1702-16. doi: 10.1104/pp.103.026914. Plant Physiol. 2003. PMID: 14681533 Free PMC article.

7

Validation and estimation of parameters for a general probabilistic model of the PCR process.

Saha N, Watson LT, Kafadar K, Ramakrishnan N, Onufriev A, Mane S, Vasquez-Robinet C. Saha N, et al. Among authors: ramakrishnan n. J Comput Biol. 2007 Jan-Feb;14(1):97-112. doi: 10.1089/cmb.2006.0123. J Comput Biol. 2007. PMID: 17381349

8

A general probabilistic model of the PCR process.

Saha N, Watson LT, Kafadar K, Onufriev A, Ramakrishnan N, Vasquez-Robinet C, Watkinson J. Saha N, et al. Among authors: ramakrishnan n. Conf Proc IEEE Eng Med Biol Soc. 2004;2004:2813-6. doi: 10.1109/IEMBS.2004.1403803. Conf Proc IEEE Eng Med Biol Soc. 2004. PMID: 17270862

9

Scatter/Gather Clustering: Flexibly Incorporating User Feedback to Steer Clustering Results.

Hossain MS, Ojili PK, Grimm C, Muller R, Watson LT, Ramakrishnan N. Hossain MS, et al. Among authors: ramakrishnan n. IEEE Trans Vis Comput Graph. 2012 Dec;18(12):2829-38. doi: 10.1109/TVCG.2012.258. IEEE Trans Vis Comput Graph. 2012. PMID: 26357192

10

Using relative importance methods to model high-throughput gene perturbation screens.

Jin Y, Ramakrishnan N, Heath LS, Helm RF. Jin Y, et al. Among authors: ramakrishnan n. Comput Syst Bioinformatics Conf. 2008;7:225-35. Comput Syst Bioinformatics Conf. 2008. PMID: 19642283 Free article.

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