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Whole exome sequencing in the rat.
Foley JF, Phadke DP, Hardy O, Hardy S, Miller V, Madan A, Howard K, Kruse K, Lord C, Ramaiahgari S, Solomon GG, Shah RR, Pandiri AR, Herbert RA, Sills RC, Merrick BA. Foley JF, et al. Among authors: ramaiahgari s. BMC Genomics. 2018 Jun 20;19(1):487. doi: 10.1186/s12864-018-4858-8. BMC Genomics. 2018. PMID: 29925311 Free PMC article.
From vision toward best practices: Evaluating in vitro transcriptomic points of departure for application in risk assessment using a uniform workflow.
Reardon AJF, Farmahin R, Williams A, Meier MJ, Addicks GC, Yauk CL, Matteo G, Atlas E, Harrill J, Everett LJ, Shah I, Judson R, Ramaiahgari S, Ferguson SS, Barton-Maclaren TS. Reardon AJF, et al. Among authors: ramaiahgari s. Front Toxicol. 2023 May 23;5:1194895. doi: 10.3389/ftox.2023.1194895. eCollection 2023. Front Toxicol. 2023. PMID: 37288009 Free PMC article.
The Power of Resolution: Contextualized Understanding of Biological Responses to Liver Injury Chemicals Using High-throughput Transcriptomics and Benchmark Concentration Modeling.
Ramaiahgari SC, Auerbach SS, Saddler TO, Rice JR, Dunlap PE, Sipes NS, DeVito MJ, Shah RR, Bushel PR, Merrick BA, Paules RS, Ferguson SS. Ramaiahgari SC, et al. Toxicol Sci. 2019 Jun 1;169(2):553-566. doi: 10.1093/toxsci/kfz065. Toxicol Sci. 2019. PMID: 30850835 Free PMC article.
Evaluation of 5-day In Vivo Rat Liver and Kidney With High-throughput Transcriptomics for Estimating Benchmark Doses of Apical Outcomes.
Gwinn WM, Auerbach SS, Parham F, Stout MD, Waidyanatha S, Mutlu E, Collins B, Paules RS, Merrick BA, Ferguson S, Ramaiahgari S, Bucher JR, Sparrow B, Toy H, Gorospe J, Machesky N, Shah RR, Balik-Meisner MR, Mav D, Phadke DP, Roberts G, DeVito MJ. Gwinn WM, et al. Among authors: ramaiahgari s. Toxicol Sci. 2020 Aug 1;176(2):343-354. doi: 10.1093/toxsci/kfaa081. Toxicol Sci. 2020. PMID: 32492150 Free PMC article.
Deep Learning Image Analysis of High-Throughput Toxicology Assay Images.
Tandon A, Howard B, Ramaiahgari S, Maharana A, Ferguson S, Shah R, Merrick BA. Tandon A, et al. Among authors: ramaiahgari s. SLAS Discov. 2022 Jan;27(1):29-38. doi: 10.1016/j.slasd.2021.10.014. Epub 2021 Oct 27. SLAS Discov. 2022. PMID: 35058173 Free PMC article.
Systems biology for organotypic cell cultures.
Grego S, Dougherty ER, Alexander FJ, Auerbach SS, Berridge BR, Bittner ML, Casey W, Cooley PC, Dash A, Ferguson SS, Fennell TR, Hawkins BT, Hickey AJ, Kleensang A, Liebman MNJ, Martin F, Maull EA, Paragas J, Qiao GG, Ramaiahgari S, Sumner SJ, Yoon M. Grego S, et al. Among authors: ramaiahgari s. ALTEX. 2017;34(2):301-310. doi: 10.14573/altex.1608221. Epub 2016 Nov 14. ALTEX. 2017. PMID: 27846345 Free article.
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