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Studying temporal titre evolution of commercial SARS-CoV-2 assays reveals significant shortcomings of using BAU standardization for comparison.
Kroidl I, Winter S, Rubio-Acero R, Bakuli A, Geldmacher C, Eser TM, Déak F, Horn S, Zielke A, Ahmed MIM, Diepers P, Guggenbühl J, Frese J, Bruger J, Puchinger K, Reich J, Falk P, Markgraf A, Fensterseifer H, Paunovic I, Thomschke A, Pritsch M, Riess F, Saathoff E, Hoelscher M, Olbrich L, Castelletti N, Wieser A; KoCo19/ORCHESTRA Study Group. Kroidl I, et al. Virol J. 2023 Sep 1;20(1):200. doi: 10.1186/s12985-023-02167-z. Virol J. 2023. PMID: 37658454 Free PMC article.
Self-Amplifying Pulsatile Protein Dynamics without Positive Feedback.
Martinez-Corral R, Raimundez E, Lin Y, Elowitz MB, Garcia-Ojalvo J. Martinez-Corral R, et al. Among authors: raimundez e. Cell Syst. 2018 Oct 24;7(4):453-462.e1. doi: 10.1016/j.cels.2018.08.012. Epub 2018 Oct 10. Cell Syst. 2018. PMID: 30316816 Free article.
PEtab-Interoperable specification of parameter estimation problems in systems biology.
Schmiester L, Schälte Y, Bergmann FT, Camba T, Dudkin E, Egert J, Fröhlich F, Fuhrmann L, Hauber AL, Kemmer S, Lakrisenko P, Loos C, Merkt S, Müller W, Pathirana D, Raimúndez E, Refisch L, Rosenblatt M, Stapor PL, Städter P, Wang D, Wieland FG, Banga JR, Timmer J, Villaverde AF, Sahle S, Kreutz C, Hasenauer J, Weindl D. Schmiester L, et al. Among authors: raimundez e. PLoS Comput Biol. 2021 Jan 26;17(1):e1008646. doi: 10.1371/journal.pcbi.1008646. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33497393 Free PMC article.
pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.
Schälte Y, Fröhlich F, Jost PJ, Vanhoefer J, Pathirana D, Stapor P, Lakrisenko P, Wang D, Raimúndez E, Merkt S, Schmiester L, Städter P, Grein S, Dudkin E, Doresic D, Weindl D, Hasenauer J. Schälte Y, et al. Among authors: raimundez e. Bioinformatics. 2023 Nov 1;39(11):btad711. doi: 10.1093/bioinformatics/btad711. Bioinformatics. 2023. PMID: 37995297 Free PMC article.
Integrative modelling of reported case numbers and seroprevalence reveals time-dependent test efficiency and infectious contacts.
Contento L, Castelletti N, Raimúndez E, Le Gleut R, Schälte Y, Stapor P, Hinske LC, Hoelscher M, Wieser A, Radon K, Fuchs C, Hasenauer J; KoCo19 study group. Contento L, et al. Among authors: raimundez e. Epidemics. 2023 Jun;43:100681. doi: 10.1016/j.epidem.2023.100681. Epub 2023 Mar 11. Epidemics. 2023. PMID: 36931114 Free PMC article.
The interplay of viral loads, clinical presentation, and serological responses in SARS-CoV-2 - Results from a prospective cohort of outpatient COVID-19 cases.
Puchinger K, Castelletti N, Rubio-Acero R, Geldmacher C, Eser TM, Deák F, Paunovic I, Bakuli A, Saathoff E, von Meyer A, Markgraf A, Falk P, Reich J, Riess F, Girl P, Müller K, Radon K, Guggenbuehl Noller JM, Wölfel R, Hoelscher M, Kroidl I, Wieser A, Olbrich L; KoCo19 study group. Puchinger K, et al. Virology. 2022 Apr;569:37-43. doi: 10.1016/j.virol.2022.02.002. Epub 2022 Feb 18. Virology. 2022. PMID: 35245784 Free PMC article.
The representative COVID-19 cohort Munich (KoCo19): from the beginning of the pandemic to the Delta virus variant.
Le Gleut R, Plank M, Pütz P, Radon K, Bakuli A, Rubio-Acero R, Paunovic I, Rieß F, Winter S, Reinkemeyer C, Schälte Y, Olbrich L, Hannes M, Kroidl I, Noreña I, Janke C, Wieser A, Hoelscher M, Fuchs C, Castelletti N; KoCo19/ORCHESTRA-study group. Le Gleut R, et al. BMC Infect Dis. 2023 Jul 13;23(1):466. doi: 10.1186/s12879-023-08435-1. BMC Infect Dis. 2023. PMID: 37442952 Free PMC article.
18 results