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Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coli.
Nat Commun. 2022 Jul 14;13(1):4085. doi: 10.1038/s41467-022-31819-x.
Nat Commun. 2022.
PMID: 35835781
Free PMC article.
Bioinformatic Analysis of Temporal and Spatial Proteome Alternations During Infections.
Rahmatbakhsh M, Gagarinova A, Babu M.
Rahmatbakhsh M, et al.
Front Genet. 2021 Jul 2;12:667936. doi: 10.3389/fgene.2021.667936. eCollection 2021.
Front Genet. 2021.
PMID: 34276775
Free PMC article.
Review.
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HPiP: an R/Bioconductor package for predicting host-pathogen protein-protein interactions from protein sequences using ensemble machine learning approach.
Rahmatbakhsh M, Moutaoufik MT, Gagarinova A, Babu M.
Rahmatbakhsh M, et al.
Bioinform Adv. 2022 May 23;2(1):vbac038. doi: 10.1093/bioadv/vbac038. eCollection 2022.
Bioinform Adv. 2022.
PMID: 35669347
Free PMC article.
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Co-fractionation-mass spectrometry to characterize native mitochondrial protein assemblies in mammalian neurons and brain.
Zilocchi M, Rahmatbakhsh M, Moutaoufik MT, Broderick K, Gagarinova A, Jessulat M, Phanse S, Aoki H, Aly KA, Babu M.
Zilocchi M, et al. Among authors: rahmatbakhsh m.
Nat Protoc. 2023 Dec;18(12):3918-3973. doi: 10.1038/s41596-023-00901-z. Epub 2023 Nov 20.
Nat Protoc. 2023.
PMID: 37985878
Review.
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