Ragsdale AP - Search Results

1

Inferring Genome-Wide Correlations of Mutation Fitness Effects between Populations.

Huang X, Fortier AL, Coffman AJ, Struck TJ, Irby MN, James JE, León-Burguete JE, Ragsdale AP, Gutenkunst RN. Huang X, et al. Among authors: ragsdale ap. Mol Biol Evol. 2021 Sep 27;38(10):4588-4602. doi: 10.1093/molbev/msab162. Mol Biol Evol. 2021. PMID: 34043790 Free PMC article.

2

Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations.

Ragsdale AP, Coffman AJ, Hsieh P, Struck TJ, Gutenkunst RN. Ragsdale AP, et al. Genetics. 2016 May;203(1):513-23. doi: 10.1534/genetics.115.184812. Epub 2016 Mar 30. Genetics. 2016. PMID: 27029732 Free PMC article.

3

Genomic inferences of domestication events are corroborated by written records in Brassica rapa.

Qi X, An H, Ragsdale AP, Hall TE, Gutenkunst RN, Chris Pires J, Barker MS. Qi X, et al. Among authors: ragsdale ap. Mol Ecol. 2017 Jul;26(13):3373-3388. doi: 10.1111/mec.14131. Epub 2017 May 5. Mol Ecol. 2017. PMID: 28371014

4

Inferring Demographic History Using Two-Locus Statistics.

Ragsdale AP, Gutenkunst RN. Ragsdale AP, et al. Genetics. 2017 Jun;206(2):1037-1048. doi: 10.1534/genetics.117.201251. Epub 2017 Apr 16. Genetics. 2017. PMID: 28413158 Free PMC article.

5

Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation.

Jouganous J, Long W, Ragsdale AP, Gravel S. Jouganous J, et al. Among authors: ragsdale ap. Genetics. 2017 Jul;206(3):1549-1567. doi: 10.1534/genetics.117.200493. Epub 2017 May 11. Genetics. 2017. PMID: 28495960 Free PMC article.

6

Genomic inference using diffusion models and the allele frequency spectrum.

Ragsdale AP, Moreau C, Gravel S. Ragsdale AP, et al. Curr Opin Genet Dev. 2018 Dec;53:140-147. doi: 10.1016/j.gde.2018.10.001. Epub 2018 Oct 23. Curr Opin Genet Dev. 2018. PMID: 30366252 Review.

7

Unbiased Estimation of Linkage Disequilibrium from Unphased Data.

Ragsdale AP, Gravel S. Ragsdale AP, et al. Mol Biol Evol. 2020 Mar 1;37(3):923-932. doi: 10.1093/molbev/msz265. Mol Biol Evol. 2020. PMID: 31697386 Free PMC article.

8

A community-maintained standard library of population genetic models.

Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, McKenzie P, Messer PW, Noskova E, Ortega-Del Vecchyo D, Racimo F, Struck TJ, Gravel S, Gutenkunst RN, Lohmueller KE, Ralph PL, Schrider DR, Siepel A, Kelleher J, Kern AD. Adrion JR, et al. Among authors: ragsdale ap. Elife. 2020 Jun 23;9:e54967. doi: 10.7554/eLife.54967. Elife. 2020. PMID: 32573438 Free PMC article.

9

Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes.

McAlvay AC, Ragsdale AP, Mabry ME, Qi X, Bird KA, Velasco P, An H, Pires JC, Emshwiller E. McAlvay AC, et al. Among authors: ragsdale ap. Mol Biol Evol. 2021 Jul 29;38(8):3358-3372. doi: 10.1093/molbev/msab108. Mol Biol Evol. 2021. PMID: 33930151 Free PMC article.

10

Demes: a standard format for demographic models.

Gower G, Ragsdale AP, Bisschop G, Gutenkunst RN, Hartfield M, Noskova E, Schiffels S, Struck TJ, Kelleher J, Thornton KR. Gower G, et al. Among authors: ragsdale ap. Genetics. 2022 Nov 1;222(3):iyac131. doi: 10.1093/genetics/iyac131. Genetics. 2022. PMID: 36173327 Free PMC article.

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