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A global phosphosite-correlated network map of Thousand And One Kinase 1 (TAOK1).
Priyanka P, Gopalakrishnan AP, Nisar M, Shivamurthy PB, George M, John L, Sanjeev D, Yandigeri T, Thomas SD, Rafi A, Dagamajalu S, Velikkakath AKG, Abhinand CS, Kanekar S, Prasad TSK, Balaya RDA, Raju R. Priyanka P, et al. Among authors: rafi a. Int J Biochem Cell Biol. 2024 May;170:106558. doi: 10.1016/j.biocel.2024.106558. Epub 2024 Mar 11. Int J Biochem Cell Biol. 2024. PMID: 38479581
Regulatory activity is the default DNA state in eukaryotes.
Luthra I, Jensen C, Chen XE, Salaudeen AL, Rafi AM, de Boer CG. Luthra I, et al. Among authors: rafi am. Nat Struct Mol Biol. 2024 Mar;31(3):559-567. doi: 10.1038/s41594-024-01235-4. Epub 2024 Mar 6. Nat Struct Mol Biol. 2024. PMID: 38448573
Evaluation and optimization of sequence-based gene regulatory deep learning models.
Rafi AM, Nogina D, Penzar D, Lee D, Lee D, Kim N, Kim S, Kim D, Shin Y, Kwak IY, Meshcheryakov G, Lando A, Zinkevich A, Kim BC, Lee J, Kang T, Vaishnav ED, Yadollahpour P; Random Promoter DREAM Challenge Consortium; Kim S, Albrecht J, Regev A, Gong W, Kulakovskiy IV, Meyer P, de Boer C. Rafi AM, et al. bioRxiv [Preprint]. 2024 Feb 17:2023.04.26.538471. doi: 10.1101/2023.04.26.538471. bioRxiv. 2024. PMID: 38405704 Free PMC article. Preprint.
118 results