R25 HG007631/HG/NHGRI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2015	3
2016	4
2017	4
2018	6
2019	1
2024	0

1

One protein to rule them all: The role of CCCTC-binding factor in shaping human genome in health and disease.

Lazniewski M, Dawson WK, Rusek AM, Plewczynski D. Lazniewski M, et al. Semin Cell Dev Biol. 2019 Jun;90:114-127. doi: 10.1016/j.semcdb.2018.08.003. Epub 2018 Oct 11. Semin Cell Dev Biol. 2019. PMID: 30096365 Free PMC article. Review.

2

The Tandem Duplicator Phenotype Is a Prevalent Genome-Wide Cancer Configuration Driven by Distinct Gene Mutations.

Menghi F, Barthel FP, Yadav V, Tang M, Ji B, Tang Z, Carter GW, Ruan Y, Scully R, Verhaak RGW, Jonkers J, Liu ET. Menghi F, et al. Cancer Cell. 2018 Aug 13;34(2):197-210.e5. doi: 10.1016/j.ccell.2018.06.008. Epub 2018 Jul 12. Cancer Cell. 2018. PMID: 30017478 Free PMC article.

3

Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.

Buisine N, Ruan X, Ruan Y, Sachs LM. Buisine N, et al. Cold Spring Harb Protoc. 2018 Aug 1;2018(8). doi: 10.1101/pdb.prot104620. Cold Spring Harb Protoc. 2018. PMID: 29895565

4

Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.

Buisine N, Ruan X, Ruan Y, Sachs LM. Buisine N, et al. Cold Spring Harb Protoc. 2018 Aug 1;2018(8). doi: 10.1101/pdb.prot097725. Cold Spring Harb Protoc. 2018. PMID: 29895563

5

The Energetics and Physiological Impact of Cohesin Extrusion.

Vian L, Pękowska A, Rao SSP, Kieffer-Kwon KR, Jung S, Baranello L, Huang SC, El Khattabi L, Dose M, Pruett N, Sanborn AL, Canela A, Maman Y, Oksanen A, Resch W, Li X, Lee B, Kovalchuk AL, Tang Z, Nelson S, Di Pierro M, Cheng RR, Machol I, St Hilaire BG, Durand NC, Shamim MS, Stamenova EK, Onuchic JN, Ruan Y, Nussenzweig A, Levens D, Aiden EL, Casellas R. Vian L, et al. Cell. 2018 May 17;173(5):1165-1178.e20. doi: 10.1016/j.cell.2018.03.072. Epub 2018 Apr 26. Cell. 2018. PMID: 29706548 Free PMC article.

6

Digestion-ligation-only Hi-C is an efficient and cost-effective method for chromosome conformation capture.

Lin D, Hong P, Zhang S, Xu W, Jamal M, Yan K, Lei Y, Li L, Ruan Y, Fu ZF, Li G, Cao G. Lin D, et al. Nat Genet. 2018 May;50(5):754-763. doi: 10.1038/s41588-018-0111-2. Epub 2018 Apr 26. Nat Genet. 2018. PMID: 29700467

7

STAT5-mediated chromatin interactions in superenhancers activate IL-2 highly inducible genes: Functional dissection of the Il2ra gene locus.

Li P, Mitra S, Spolski R, Oh J, Liao W, Tang Z, Mo F, Li X, West EE, Gromer D, Lin JX, Liu C, Ruan Y, Leonard WJ. Li P, et al. Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):12111-12119. doi: 10.1073/pnas.1714019114. Epub 2017 Oct 24. Proc Natl Acad Sci U S A. 2017. PMID: 29078395 Free PMC article.

8

Evolutionarily Conserved Principles Predict 3D Chromatin Organization.

Rowley MJ, Nichols MH, Lyu X, Ando-Kuri M, Rivera ISM, Hermetz K, Wang P, Ruan Y, Corces VG. Rowley MJ, et al. Mol Cell. 2017 Sep 7;67(5):837-852.e7. doi: 10.1016/j.molcel.2017.07.022. Epub 2017 Aug 17. Mol Cell. 2017. PMID: 28826674 Free PMC article.

9

Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions.

Li X, Luo OJ, Wang P, Zheng M, Wang D, Piecuch E, Zhu JJ, Tian SZ, Tang Z, Li G, Ruan Y. Li X, et al. Nat Protoc. 2017 May;12(5):899-915. doi: 10.1038/nprot.2017.012. Epub 2017 Mar 30. Nat Protoc. 2017. PMID: 28358394 Free PMC article.

10

ASXL1 interacts with the cohesin complex to maintain chromatid separation and gene expression for normal hematopoiesis.

Li Z, Zhang P, Yan A, Guo Z, Ban Y, Li J, Chen S, Yang H, He Y, Li J, Guo Y, Zhang W, Hajiramezanali E, An H, Fajardo D, Harbour JW, Ruan Y, Nimer SD, Yu P, Chen X, Xu M, Yang FC. Li Z, et al. Sci Adv. 2017 Jan 20;3(1):e1601602. doi: 10.1126/sciadv.1601602. eCollection 2017 Jan. Sci Adv. 2017. PMID: 28116354 Free PMC article.

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