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Table representation of search results timeline featuring number of search results per year.
Year | Number of Results |
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2021 | 1 |
2022 | 1 |
2023 | 4 |
2024 | 1 |
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7 results
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Page 1
Contrasting and Combining Transcriptome Complexity Captured by Short and Long RNA Sequencing Reads.
bioRxiv [Preprint]. 2023 Nov 21:2023.11.21.568046. doi: 10.1101/2023.11.21.568046.
bioRxiv. 2023.
PMID: 38045232
Free PMC article.
Preprint.
MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer.
Quesnel-Vallières M, Jewell S, Lynch KW, Thomas-Tikhonenko A, Barash Y.
Quesnel-Vallières M, et al.
Nucleic Acids Res. 2024 Jan 5;52(D1):D213-D221. doi: 10.1093/nar/gkad1043.
Nucleic Acids Res. 2024.
PMID: 37953365
Free PMC article.
Item in Clipboard
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.
Bryce-Smith S, Burri D, Gazzara MR, Herrmann CJ, Danecka W, Fitzsimmons CM, Wan YK, Zhuang F, Fansler MM, Fernández JM, Ferret M, Gonzalez-Uriarte A, Haynes S, Herdman C, Kanitz A, Katsantoni M, Marini F, McDonnel E, Nicolet B, Poon CL, Rot G, Schärfen L, Wu PJ, Yoon Y, Barash Y, Zavolan M.
Bryce-Smith S, et al.
RNA. 2023 Dec;29(12):1839-1855. doi: 10.1261/rna.079849.123. Epub 2023 Oct 10.
RNA. 2023.
PMID: 37816550
Free PMC article.
Review.
Item in Clipboard
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.
Bryce-Smith S, Burri D, Gazzara MR, Herrmann CJ, Danecka W, Fitzsimmons CM, Wan YK, Zhuang F, Fansler MM, Fernández JM, Ferret M, Gonzalez-Uriarte A, Haynes S, Herdman C, Kanitz A, Katsantoni M, Marini F, McDonnel E, Nicolet B, Poon CL, Rot G, Schärfen L, Wu PJ, Yoon Y, Barash Y, Zavolan M.
Bryce-Smith S, et al.
bioRxiv [Preprint]. 2023 Jun 26:2023.06.23.546284. doi: 10.1101/2023.06.23.546284.
bioRxiv. 2023.
PMID: 37425672
Free PMC article.
Updated.
Preprint.
Item in Clipboard
RNA splicing analysis using heterogeneous and large RNA-seq datasets.
Vaquero-Garcia J, Aicher JK, Jewell S, Gazzara MR, Radens CM, Jha A, Norton SS, Lahens NF, Grant GR, Barash Y.
Vaquero-Garcia J, et al.
Nat Commun. 2023 Mar 3;14(1):1230. doi: 10.1038/s41467-023-36585-y.
Nat Commun. 2023.
PMID: 36869033
Free PMC article.
Item in Clipboard
Identifying common transcriptome signatures of cancer by interpreting deep learning models.
Jha A, Quesnel-Vallières M, Wang D, Thomas-Tikhonenko A, Lynch KW, Barash Y.
Jha A, et al.
Genome Biol. 2022 May 17;23(1):117. doi: 10.1186/s13059-022-02681-3.
Genome Biol. 2022.
PMID: 35581644
Free PMC article.
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Direct long-read RNA sequencing identifies a subset of questionable exitrons likely arising from reverse transcription artifacts.
Schulz L, Torres-Diz M, Cortés-López M, Hayer KE, Asnani M, Tasian SK, Barash Y, Sotillo E, Zarnack K, König J, Thomas-Tikhonenko A.
Schulz L, et al.
Genome Biol. 2021 Jun 28;22(1):190. doi: 10.1186/s13059-021-02411-1.
Genome Biol. 2021.
PMID: 34183059
Free PMC article.
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