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Table representation of search results timeline featuring number of search results per year.
Year | Number of Results |
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2022 | 2 |
2023 | 4 |
2024 | 2 |
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Page 1
The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level in fruit flies.
Epigenetics Chromatin. 2024 May 6;17(1):13. doi: 10.1186/s13072-024-00528-8.
Epigenetics Chromatin. 2024.
PMID: 38705995
Free PMC article.
Improving the Accuracy of Physics-Based Hydration-Free Energy Predictions by Machine Learning the Remaining Error Relative to the Experiment.
Bass L, Elder LH, Folescu DE, Forouzesh N, Tolokh IS, Karpatne A, Onufriev AV.
Bass L, et al.
J Chem Theory Comput. 2024 Jan 9;20(1):396-410. doi: 10.1021/acs.jctc.3c00981. Epub 2023 Dec 27.
J Chem Theory Comput. 2024.
PMID: 38149593
Free PMC article.
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AmberTools.
Case DA, Aktulga HM, Belfon K, Cerutti DS, Cisneros GA, Cruzeiro VWD, Forouzesh N, Giese TJ, Götz AW, Gohlke H, Izadi S, Kasavajhala K, Kaymak MC, King E, Kurtzman T, Lee TS, Li P, Liu J, Luchko T, Luo R, Manathunga M, Machado MR, Nguyen HM, O'Hearn KA, Onufriev AV, Pan F, Pantano S, Qi R, Rahnamoun A, Risheh A, Schott-Verdugo S, Shajan A, Swails J, Wang J, Wei H, Wu X, Wu Y, Zhang S, Zhao S, Zhu Q, Cheatham TE 3rd, Roe DR, Roitberg A, Simmerling C, York DM, Nagan MC, Merz KM Jr.
Case DA, et al.
J Chem Inf Model. 2023 Oct 23;63(20):6183-6191. doi: 10.1021/acs.jcim.3c01153. Epub 2023 Oct 8.
J Chem Inf Model. 2023.
PMID: 37805934
Free PMC article.
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Strong interactions between highly dynamic lamina-associated domains and the nuclear envelope stabilize the 3D architecture of Drosophila interphase chromatin.
Tolokh IS, Kinney NA, Sharakhov IV, Onufriev AV.
Tolokh IS, et al.
Epigenetics Chromatin. 2023 May 30;16(1):21. doi: 10.1186/s13072-023-00492-9.
Epigenetics Chromatin. 2023.
PMID: 37254161
Free PMC article.
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Biologically relevant small variations of intra-cellular pH can have significant effect on stability of protein-DNA complexes, including the nucleosome.
Onufriev AV.
Onufriev AV.
Front Mol Biosci. 2023 Apr 18;10:1067787. doi: 10.3389/fmolb.2023.1067787. eCollection 2023.
Front Mol Biosci. 2023.
PMID: 37143824
Free PMC article.
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Fast Polarizable Water Model for Atomistic Simulations.
Xiong Y, Izadi S, Onufriev AV.
Xiong Y, et al.
J Chem Theory Comput. 2022 Oct 11;18(10):6324-6333. doi: 10.1021/acs.jctc.2c00378. Epub 2022 Oct 3.
J Chem Theory Comput. 2022.
PMID: 36190318
Free PMC article.
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A Closed-Form, Analytical Approximation for Apparent Surface Charge and Electric Field of Molecules.
Folescu DE, Onufriev AV.
Folescu DE, et al.
ACS Omega. 2022 Jul 19;7(30):26123-26136. doi: 10.1021/acsomega.2c01484. eCollection 2022 Aug 2.
ACS Omega. 2022.
PMID: 35936397
Free PMC article.
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