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63 results

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Page 1
GRAMM Web Server for Protein Docking.
Singh A, Copeland MM, Kundrotas PJ, Vakser IA. Singh A, et al. Methods Mol Biol. 2024;2714:101-112. doi: 10.1007/978-1-0716-3441-7_5. Methods Mol Biol. 2024. PMID: 37676594
Dockground resource for protein recognition studies.
Collins KW, Copeland MM, Kotthoff I, Singh A, Kundrotas PJ, Vakser IA. Collins KW, et al. Protein Sci. 2022 Dec;31(12):e4481. doi: 10.1002/pro.4481. Protein Sci. 2022. PMID: 36281025 Free PMC article.
DOCKGROUND membrane protein-protein set.
Kotthoff I, Kundrotas PJ, Vakser IA. Kotthoff I, et al. PLoS One. 2022 May 17;17(5):e0267531. doi: 10.1371/journal.pone.0267531. eCollection 2022. PLoS One. 2022. PMID: 35580077 Free PMC article.
Dockground scoring benchmarks for protein docking.
Kotthoff I, Kundrotas PJ, Vakser IA. Kotthoff I, et al. Proteins. 2022 Jun;90(6):1259-1266. doi: 10.1002/prot.26306. Epub 2022 Feb 5. Proteins. 2022. PMID: 35072956 Free PMC article.
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, Yang G, Liu M, Shi H, Lu X, Chang S, Roy RS, Quadir F, Liu J, Cheng J, Antoniak A, Czaplewski C, Giełdoń A, Kogut M, Lipska AG, Liwo A, Lubecka EA, Maszota-Zieleniak M, Sieradzan AK, Ślusarz R, Wesołowski PA, Zięba K, Del Carpio Muñoz CA, Ichiishi E, Harmalkar A, Gray JJ, Bonvin AMJJ, Ambrosetti F, Vargas Honorato R, Jandova Z, Jiménez-García B, Koukos PI, Van Keulen S, Van Noort CW, Réau M, Roel-Touris J, Kotelnikov S, Padhorny D, Porter KA, Alekseenko A, Ignatov M, Desta I, Ashizawa R, Sun Z, Ghani U, Hashemi N, Vajda S, Kozakov D, Rosell M, Rodríguez-Lumbreras LA, Fernandez-Recio J, Karczynska A, Grudinin S, Yan Y, Li H, Lin P, Huang SY, Christoffer C, Terashi G, Verburgt J, Sarkar D, Aderinwale T, Wang X, Kihara D, Nakamura T, Hanazono Y, Gowthaman R, Guest JD, Yin R, Taherzadeh G, Pierce BG, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Sun Y, Zhu S, Shen Y, Park T, Woo H, Yang J, Kwon S, Won J, Seok C, Kiyota Y, Kobayashi S, Harada Y, Takeda-Shitaka M, Kundrotas PJ, Singh A, Vakser IA, Dapkūnas J, Olechnovič K, Venclovas Č, Duan R, Qiu L, Xu X, Zhang S, Zou X, Wodak … See abstract for full author list ➔ Lensink MF, et al. Proteins. 2021 Dec;89(12):1800-1823. doi: 10.1002/prot.26222. Epub 2021 Sep 13. Proteins. 2021. PMID: 34453465 Free PMC article.
63 results