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2020 1
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2024 3

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Page 1
moPepGen: Rapid and Comprehensive Proteoform Identification.
Zhu C, Liu LY, Yamaguchi TN, Zhu H, Hugh-White R, Livingstone J, Patel Y, Kislinger T, Boutros PC. Zhu C, et al. bioRxiv [Preprint]. 2024 Mar 31:2024.03.28.587261. doi: 10.1101/2024.03.28.587261. bioRxiv. 2024. PMID: 38585946 Free PMC article. Preprint.
NFTest: automated testing of Nextflow pipelines.
Patel Y, Zhu C, Yamaguchi TN, Bugh YZ, Tian M, Holmes A, Fitz-Gibbon ST, Boutros PC. Patel Y, et al. Bioinformatics. 2024 Feb 1;40(2):btae081. doi: 10.1093/bioinformatics/btae081. Bioinformatics. 2024. PMID: 38341660 Free PMC article.
Drug screening at single-organoid resolution via bioprinting and interferometry.
Tebon PJ, Wang B, Markowitz AL, Davarifar A, Tsai BL, Krawczuk P, Gonzalez AE, Sartini S, Murray GF, Nguyen HTL, Tavanaie N, Nguyen TL, Boutros PC, Teitell MA, Soragni A. Tebon PJ, et al. Nat Commun. 2023 Jun 6;14(1):3168. doi: 10.1038/s41467-023-38832-8. Nat Commun. 2023. PMID: 37280220 Free PMC article.
Personalized chordoma organoids for drug discovery studies.
Al Shihabi A, Davarifar A, Nguyen HTL, Tavanaie N, Nelson SD, Yanagawa J, Federman N, Bernthal N, Hornicek F, Soragni A. Al Shihabi A, et al. Sci Adv. 2022 Feb 18;8(7):eabl3674. doi: 10.1126/sciadv.abl3674. Epub 2022 Feb 16. Sci Adv. 2022. PMID: 35171675 Free PMC article.
Organoids.
Zhao Z, Chen X, Dowbaj AM, Sljukic A, Bratlie K, Lin L, Fong ELS, Balachander GM, Chen Z, Soragni A, Huch M, Zeng YA, Wang Q, Yu H. Zhao Z, et al. Nat Rev Methods Primers. 2022;2:94. doi: 10.1038/s43586-022-00174-y. Epub 2022 Dec 1. Nat Rev Methods Primers. 2022. PMID: 37325195 Free PMC article.
A practical guide to cancer subclonal reconstruction from DNA sequencing.
Tarabichi M, Salcedo A, Deshwar AG, Ni Leathlobhair M, Wintersinger J, Wedge DC, Van Loo P, Morris QD, Boutros PC. Tarabichi M, et al. Nat Methods. 2021 Feb;18(2):144-155. doi: 10.1038/s41592-020-01013-2. Epub 2021 Jan 4. Nat Methods. 2021. PMID: 33398189 Free PMC article. Review.