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The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support.
Irmisch A, Bonilla X, Chevrier S, Lehmann KV, Singer F, Toussaint NC, Esposito C, Mena J, Milani ES, Casanova R, Stekhoven DJ, Wegmann R, Jacob F, Sobottka B, Goetze S, Kuipers J, Sarabia Del Castillo J, Prummer M, Tuncel MA, Menzel U, Jacobs A, Engler S, Sivapatham S, Frei AL, Gut G, Ficek J, Miglino N; Tumor Profiler Consortium; Aebersold R, Bacac M, Beerenwinkel N, Beisel C, Bodenmiller B, Dummer R, Heinzelmann-Schwarz V, Koelzer VH, Manz MG, Moch H, Pelkmans L, Snijder B, Theocharides APA, Tolnay M, Wicki A, Wollscheid B, Rätsch G, Levesque MP. Irmisch A, et al. Among authors: ratsch g. Cancer Cell. 2021 Mar 8;39(3):288-293. doi: 10.1016/j.ccell.2021.01.004. Epub 2021 Jan 21. Cancer Cell. 2021. PMID: 33482122 Free article.
Exploiting physico-chemical properties in string kernels.
Toussaint NC, Widmer C, Kohlbacher O, Rätsch G. Toussaint NC, et al. Among authors: ratsch g. BMC Bioinformatics. 2010 Oct 26;11 Suppl 8(Suppl 8):S7. doi: 10.1186/1471-2105-11-S8-S7. BMC Bioinformatics. 2010. PMID: 21034432 Free PMC article.
RNA-Seq read alignments with PALMapper.
Jean G, Kahles A, Sreedharan VT, De Bona F, Rätsch G. Jean G, et al. Among authors: ratsch g. Curr Protoc Bioinformatics. 2010 Dec;Chapter 11:Unit 11.6. doi: 10.1002/0471250953.bi1106s32. Curr Protoc Bioinformatics. 2010. PMID: 21154708
MMR: a tool for read multi-mapper resolution.
Kahles A, Behr J, Rätsch G. Kahles A, et al. Among authors: ratsch g. Bioinformatics. 2016 Mar 1;32(5):770-2. doi: 10.1093/bioinformatics/btv624. Epub 2015 Oct 30. Bioinformatics. 2016. PMID: 26519503 Free PMC article.
164 results