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Developing data interoperability using standards: A wheat community use case.
Dzale Yeumo E, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA, Jonquet C, Laporte MA, Larmande P, Pommier C, Protonotarios V, Reverte C, Shrestha R, Subirats I, Venkatesan A, Whan A, Quesneville H. Dzale Yeumo E, et al. Among authors: quesneville h. F1000Res. 2017 Oct 16;6:1843. doi: 10.12688/f1000research.12234.2. eCollection 2017. F1000Res. 2017. PMID: 29333241 Free PMC article.
Tedna: a transposable element de novo assembler.
Zytnicki M, Akhunov E, Quesneville H. Zytnicki M, et al. Among authors: quesneville h. Bioinformatics. 2014 Sep 15;30(18):2656-8. doi: 10.1093/bioinformatics/btu365. Epub 2014 Jun 3. Bioinformatics. 2014. PMID: 24894500
GnpIS: an information system to integrate genetic and genomic data from plants and fungi.
Steinbach D, Alaux M, Amselem J, Choisne N, Durand S, Flores R, Keliet AO, Kimmel E, Lapalu N, Luyten I, Michotey C, Mohellibi N, Pommier C, Reboux S, Valdenaire D, Verdelet D, Quesneville H. Steinbach D, et al. Among authors: quesneville h. Database (Oxford). 2013 Aug 19;2013:bat058. doi: 10.1093/database/bat058. Print 2013. Database (Oxford). 2013. PMID: 23959375 Free PMC article.
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.
Alaux M, Rogers J, Letellier T, Flores R, Alfama F, Pommier C, Mohellibi N, Durand S, Kimmel E, Michotey C, Guerche C, Loaec M, Lainé M, Steinbach D, Choulet F, Rimbert H, Leroy P, Guilhot N, Salse J, Feuillet C; International Wheat Genome Sequencing Consortium; Paux E, Eversole K, Adam-Blondon AF, Quesneville H. Alaux M, et al. Among authors: quesneville h. Genome Biol. 2018 Aug 17;19(1):111. doi: 10.1186/s13059-018-1491-4. Genome Biol. 2018. PMID: 30115101 Free PMC article.
Towards an open grapevine information system.
Adam-Blondon AF, Alaux M, Pommier C, Cantu D, Cheng ZM, Cramer GR, Davies C, Delrot S, Deluc L, Di Gaspero G, Grimplet J, Fennell A, Londo JP, Kersey P, Mattivi F, Naithani S, Neveu P, Nikolski M, Pezzotti M, Reisch BI, Töpfer R, Vivier MA, Ware D, Quesneville H. Adam-Blondon AF, et al. Among authors: quesneville h. Hortic Res. 2016 Nov 23;3:16056. doi: 10.1038/hortres.2016.56. eCollection 2016. Hortic Res. 2016. PMID: 27917288 Free PMC article. Review.
Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS.
Pommier C, Michotey C, Cornut G, Roumet P, Duchêne E, Flores R, Lebreton A, Alaux M, Durand S, Kimmel E, Letellier T, Merceron G, Laine M, Guerche C, Loaec M, Steinbach D, Laporte MA, Arnaud E, Quesneville H, Adam-Blondon AF. Pommier C, et al. Among authors: quesneville h. Plant Phenomics. 2019 Apr 30;2019:1671403. doi: 10.34133/2019/1671403. eCollection 2019. Plant Phenomics. 2019. PMID: 33313522 Free PMC article.
108 results