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PUMA: PANDA Using MicroRNA Associations.
Kuijjer ML, Fagny M, Marin A, Quackenbush J, Glass K. Kuijjer ML, et al. Among authors: quackenbush j. Bioinformatics. 2020 Sep 15;36(18):4765-4773. doi: 10.1093/bioinformatics/btaa571. Bioinformatics. 2020. PMID: 32860050 Free PMC article.
Microarray blob-defect removal improves array analysis.
Song JS, Maghsoudi K, Li W, Fox E, Quackenbush J, Shirley Liu X. Song JS, et al. Among authors: quackenbush j. Bioinformatics. 2007 Apr 15;23(8):966-71. doi: 10.1093/bioinformatics/btm043. Epub 2007 Mar 1. Bioinformatics. 2007. PMID: 17332024
RNA-Seq analysis in MeV.
Howe EA, Sinha R, Schlauch D, Quackenbush J. Howe EA, et al. Among authors: quackenbush j. Bioinformatics. 2011 Nov 15;27(22):3209-10. doi: 10.1093/bioinformatics/btr490. Epub 2011 Oct 5. Bioinformatics. 2011. PMID: 21976420 Free PMC article.
iBBiG: iterative binary bi-clustering of gene sets.
Gusenleitner D, Howe EA, Bentink S, Quackenbush J, Culhane AC. Gusenleitner D, et al. Among authors: quackenbush j. Bioinformatics. 2012 Oct 1;28(19):2484-92. doi: 10.1093/bioinformatics/bts438. Epub 2012 Jul 12. Bioinformatics. 2012. PMID: 22789589 Free PMC article.
Sexually-dimorphic targeting of functionally-related genes in COPD.
Glass K, Quackenbush J, Silverman EK, Celli B, Rennard SI, Yuan GC, DeMeo DL. Glass K, et al. Among authors: quackenbush j. BMC Syst Biol. 2014 Nov 28;8:118. doi: 10.1186/s12918-014-0118-y. BMC Syst Biol. 2014. PMID: 25431000 Free PMC article.
Haploinsufficiency of Hedgehog interacting protein causes increased emphysema induced by cigarette smoke through network rewiring.
Lao T, Glass K, Qiu W, Polverino F, Gupta K, Morrow J, Mancini JD, Vuong L, Perrella MA, Hersh CP, Owen CA, Quackenbush J, Yuan GC, Silverman EK, Zhou X. Lao T, et al. Among authors: quackenbush j. Genome Med. 2015 Feb 14;7(1):12. doi: 10.1186/s13073-015-0137-3. eCollection 2015. Genome Med. 2015. PMID: 25763110 Free PMC article.
354 results