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Molecular networks in Network Medicine: Development and applications.
Silverman EK, Schmidt HHHW, Anastasiadou E, Altucci L, Angelini M, Badimon L, Balligand JL, Benincasa G, Capasso G, Conte F, Di Costanzo A, Farina L, Fiscon G, Gatto L, Gentili M, Loscalzo J, Marchese C, Napoli C, Paci P, Petti M, Quackenbush J, Tieri P, Viggiano D, Vilahur G, Glass K, Baumbach J. Silverman EK, et al. Among authors: quackenbush j. Wiley Interdiscip Rev Syst Biol Med. 2020 Nov;12(6):e1489. doi: 10.1002/wsbm.1489. Epub 2020 Apr 19. Wiley Interdiscip Rev Syst Biol Med. 2020. PMID: 32307915 Free PMC article. Review.
Gene expression analysis uncovers novel hedgehog interacting protein (HHIP) effects in human bronchial epithelial cells.
Zhou X, Qiu W, Sathirapongsasuti JF, Cho MH, Mancini JD, Lao T, Thibault DM, Litonjua AA, Bakke PS, Gulsvik A, Lomas DA, Beaty TH, Hersh CP, Anderson C, Geigenmuller U, Raby BA, Rennard SI, Perrella MA, Choi AM, Quackenbush J, Silverman EK. Zhou X, et al. Among authors: quackenbush j. Genomics. 2013 May;101(5):263-72. doi: 10.1016/j.ygeno.2013.02.010. Epub 2013 Mar 1. Genomics. 2013. PMID: 23459001 Free PMC article.
Sexually-dimorphic targeting of functionally-related genes in COPD.
Glass K, Quackenbush J, Silverman EK, Celli B, Rennard SI, Yuan GC, DeMeo DL. Glass K, et al. Among authors: quackenbush j. BMC Syst Biol. 2014 Nov 28;8:118. doi: 10.1186/s12918-014-0118-y. BMC Syst Biol. 2014. PMID: 25431000 Free PMC article.
Haploinsufficiency of Hedgehog interacting protein causes increased emphysema induced by cigarette smoke through network rewiring.
Lao T, Glass K, Qiu W, Polverino F, Gupta K, Morrow J, Mancini JD, Vuong L, Perrella MA, Hersh CP, Owen CA, Quackenbush J, Yuan GC, Silverman EK, Zhou X. Lao T, et al. Among authors: quackenbush j. Genome Med. 2015 Feb 14;7(1):12. doi: 10.1186/s13073-015-0137-3. eCollection 2015. Genome Med. 2015. PMID: 25763110 Free PMC article.
A network model for angiogenesis in ovarian cancer.
Glass K, Quackenbush J, Spentzos D, Haibe-Kains B, Yuan GC. Glass K, et al. Among authors: quackenbush j. BMC Bioinformatics. 2015 Apr 11;16:115. doi: 10.1186/s12859-015-0551-y. BMC Bioinformatics. 2015. PMID: 25888305 Free PMC article.
Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice.
Cloonan SM, Glass K, Laucho-Contreras ME, Bhashyam AR, Cervo M, Pabón MA, Konrad C, Polverino F, Siempos II, Perez E, Mizumura K, Ghosh MC, Parameswaran H, Williams NC, Rooney KT, Chen ZH, Goldklang MP, Yuan GC, Moore SC, Demeo DL, Rouault TA, D'Armiento JM, Schon EA, Manfredi G, Quackenbush J, Mahmood A, Silverman EK, Owen CA, Choi AM. Cloonan SM, et al. Among authors: quackenbush j. Nat Med. 2016 Feb;22(2):163-74. doi: 10.1038/nm.4021. Epub 2016 Jan 11. Nat Med. 2016. PMID: 26752519 Free PMC article.
PyPanda: a Python package for gene regulatory network reconstruction.
van IJzendoorn DG, Glass K, Quackenbush J, Kuijjer ML. van IJzendoorn DG, et al. Among authors: quackenbush j. Bioinformatics. 2016 Nov 1;32(21):3363-3365. doi: 10.1093/bioinformatics/btw422. Epub 2016 Jul 10. Bioinformatics. 2016. PMID: 27402905 Free PMC article.
354 results