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Divergent transcription is associated with promoters of transcriptional regulators.
Lepoivre C, Belhocine M, Bergon A, Griffon A, Yammine M, Vanhille L, Zacarias-Cabeza J, Garibal MA, Koch F, Maqbool MA, Fenouil R, Loriod B, Holota H, Gut M, Gut I, Imbert J, Andrau JC, Puthier D, Spicuglia S. Lepoivre C, et al. Among authors: puthier d. BMC Genomics. 2013 Dec 23;14:914. doi: 10.1186/1471-2164-14-914. BMC Genomics. 2013. PMID: 24365181 Free PMC article.
[Functions of lncRNA in development and diseases].
Mathieu EL, Belhocine M, Dao LT, Puthier D, Spicuglia S. Mathieu EL, et al. Among authors: puthier d. Med Sci (Paris). 2014 Aug-Sep;30(8-9):790-6. doi: 10.1051/medsci/20143008018. Epub 2014 Sep 1. Med Sci (Paris). 2014. PMID: 25174757 Free article. Review. French.
Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters.
Goudarzi A, Zhang D, Huang H, Barral S, Kwon OK, Qi S, Tang Z, Buchou T, Vitte AL, He T, Cheng Z, Montellier E, Gaucher J, Curtet S, Debernardi A, Charbonnier G, Puthier D, Petosa C, Panne D, Rousseaux S, Roeder RG, Zhao Y, Khochbin S. Goudarzi A, et al. Among authors: puthier d. Mol Cell. 2016 Apr 21;62(2):169-180. doi: 10.1016/j.molcel.2016.03.014. Mol Cell. 2016. PMID: 27105113 Free PMC article.
Genome-wide characterization of mammalian promoters with distal enhancer functions.
Dao LTM, Galindo-Albarrán AO, Castro-Mondragon JA, Andrieu-Soler C, Medina-Rivera A, Souaid C, Charbonnier G, Griffon A, Vanhille L, Stephen T, Alomairi J, Martin D, Torres M, Fernandez N, Soler E, van Helden J, Puthier D, Spicuglia S. Dao LTM, et al. Among authors: puthier d. Nat Genet. 2017 Jul;49(7):1073-1081. doi: 10.1038/ng.3884. Epub 2017 Jun 5. Nat Genet. 2017. PMID: 28581502
Widespread Enhancer Activity from Core Promoters.
Medina-Rivera A, Santiago-Algarra D, Puthier D, Spicuglia S. Medina-Rivera A, et al. Among authors: puthier d. Trends Biochem Sci. 2018 Jun;43(6):452-468. doi: 10.1016/j.tibs.2018.03.004. Epub 2018 Apr 16. Trends Biochem Sci. 2018. PMID: 29673772 Free article. Review.
Epigenetic Silencing Affects l-Asparaginase Sensitivity and Predicts Outcome in T-ALL.
Touzart A, Lengliné E, Latiri M, Belhocine M, Smith C, Thomas X, Spicuglia S, Puthier D, Pflumio F, Leguay T, Graux C, Chalandon Y, Huguet F, Leprêtre S, Ifrah N, Dombret H, Macintyre E, Hunault M, Boissel N, Asnafi V. Touzart A, et al. Among authors: puthier d. Clin Cancer Res. 2019 Apr 15;25(8):2483-2493. doi: 10.1158/1078-0432.CCR-18-1844. Epub 2019 Jan 18. Clin Cancer Res. 2019. PMID: 30659025
Explore, edit and leverage genomic annotations using Python GTF toolkit.
Lopez F, Charbonnier G, Kermezli Y, Belhocine M, Ferré Q, Zweig N, Aribi M, Gonzalez A, Spicuglia S, Puthier D. Lopez F, et al. Among authors: puthier d. Bioinformatics. 2019 Sep 15;35(18):3487-3488. doi: 10.1093/bioinformatics/btz116. Bioinformatics. 2019. PMID: 30768152
68 results