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SuperDCA for genome-wide epistasis analysis.
Puranen S, Pesonen M, Pensar J, Xu YY, Lees JA, Bentley SD, Croucher NJ, Corander J. Puranen S, et al. Microb Genom. 2018 Jun;4(6):e000184. doi: 10.1099/mgen.0.000184. Epub 2018 May 29. Microb Genom. 2018. PMID: 29813016 Free PMC article.
Probabilistic prediction of contacts in protein-ligand complexes.
Hakulinen R, Puranen S, Lehtonen JV, Johnson MS, Corander J. Hakulinen R, et al. Among authors: puranen s. PLoS One. 2012;7(11):e49216. doi: 10.1371/journal.pone.0049216. Epub 2012 Nov 14. PLoS One. 2012. PMID: 23155467 Free PMC article.
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis.
Skwark MJ, Croucher NJ, Puranen S, Chewapreecha C, Pesonen M, Xu YY, Turner P, Harris SR, Beres SB, Musser JM, Parkhill J, Bentley SD, Aurell E, Corander J. Skwark MJ, et al. Among authors: puranen s. PLoS Genet. 2017 Feb 16;13(2):e1006508. doi: 10.1371/journal.pgen.1006508. eCollection 2017 Feb. PLoS Genet. 2017. PMID: 28207813 Free PMC article.
Genome-wide epistasis and co-selection study using mutual information.
Pensar J, Puranen S, Arnold B, MacAlasdair N, Kuronen J, Tonkin-Hill G, Pesonen M, Xu Y, Sipola A, Sánchez-Busó L, Lees JA, Chewapreecha C, Bentley SD, Harris SR, Parkhill J, Croucher NJ, Corander J. Pensar J, et al. Among authors: puranen s. Nucleic Acids Res. 2019 Oct 10;47(18):e112. doi: 10.1093/nar/gkz656. Nucleic Acids Res. 2019. PMID: 31361894 Free PMC article.
Epistasis, core-genome disharmony, and adaptation in recombining bacteria.
Taylor AJ, Yahara K, Pascoe B, Ko S, Mageiros L, Mourkas E, Calland JK, Puranen S, Hitchings MD, Jolley KA, Kobras CM, Bayliss S, Williams NJ, van Vliet AHM, Parkhill J, Maiden MCJ, Corander J, Hurst LD, Falush D, Keim P, Didelot X, Kelly DJ, Sheppard SK. Taylor AJ, et al. Among authors: puranen s. mBio. 2024 Apr 29:e0058124. doi: 10.1128/mbio.00581-24. Online ahead of print. mBio. 2024. PMID: 38683013 Free article.
The collagen receptor subfamily of the integrins.
White DJ, Puranen S, Johnson MS, Heino J. White DJ, et al. Among authors: puranen s. Int J Biochem Cell Biol. 2004 Aug;36(8):1405-10. doi: 10.1016/j.biocel.2003.08.016. Int J Biochem Cell Biol. 2004. PMID: 15147720 Review.
11 results