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A Simulation-Based Approach to Statistical Alignment.
Levy Karin E, Ashkenazy H, Hein J, Pupko T. Levy Karin E, et al. Among authors: pupko t. Syst Biol. 2019 Mar 1;68(2):252-266. doi: 10.1093/sysbio/syy059. Syst Biol. 2019. PMID: 30239957
A combined empirical and mechanistic codon model.
Doron-Faigenboim A, Pupko T. Doron-Faigenboim A, et al. Among authors: pupko t. Mol Biol Evol. 2007 Feb;24(2):388-97. doi: 10.1093/molbev/msl175. Epub 2006 Nov 16. Mol Biol Evol. 2007. PMID: 17110464
A likelihood framework to analyse phyletic patterns.
Cohen O, Rubinstein ND, Stern A, Gophna U, Pupko T. Cohen O, et al. Among authors: pupko t. Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27;363(1512):3903-11. doi: 10.1098/rstb.2008.0177. Philos Trans R Soc Lond B Biol Sci. 2008. PMID: 18852099 Free PMC article.
GUIDANCE: a web server for assessing alignment confidence scores.
Penn O, Privman E, Ashkenazy H, Landan G, Graur D, Pupko T. Penn O, et al. Among authors: pupko t. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W23-8. doi: 10.1093/nar/gkq443. Epub 2010 May 23. Nucleic Acids Res. 2010. PMID: 20497997 Free PMC article.
133 results