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The interface of protein structure, protein biophysics, and molecular evolution.
Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, Lakner C, Lartillot N, Lovell SC, Naylor G, Perica T, Pollock DD, Pupko T, Regan L, Roger A, Rubinstein N, Shakhnovich E, Sjölander K, Sunyaev S, Teufel AI, Thorne JL, Thornton JW, Weinreich DM, Whelan S. Liberles DA, et al. Among authors: pupko t. Protein Sci. 2012 Jun;21(6):769-85. doi: 10.1002/pro.2071. Epub 2012 Apr 23. Protein Sci. 2012. PMID: 22528593 Free PMC article. Review.
Computational characterization of B-cell epitopes.
Rubinstein ND, Mayrose I, Halperin D, Yekutieli D, Gershoni JM, Pupko T. Rubinstein ND, et al. Among authors: pupko t. Mol Immunol. 2008 Jul;45(12):3477-89. doi: 10.1016/j.molimm.2007.10.016. Epub 2007 Nov 26. Mol Immunol. 2008. PMID: 18023478
A likelihood framework to analyse phyletic patterns.
Cohen O, Rubinstein ND, Stern A, Gophna U, Pupko T. Cohen O, et al. Among authors: pupko t. Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27;363(1512):3903-11. doi: 10.1098/rstb.2008.0177. Philos Trans R Soc Lond B Biol Sci. 2008. PMID: 18852099 Free PMC article.
A machine-learning approach for predicting B-cell epitopes.
Rubinstein ND, Mayrose I, Pupko T. Rubinstein ND, et al. Among authors: pupko t. Mol Immunol. 2009 Feb;46(5):840-7. doi: 10.1016/j.molimm.2008.09.009. Epub 2008 Oct 22. Mol Immunol. 2009. PMID: 18947876
Regulation of alternative splicing at the single-cell level.
Faigenbloom L, Rubinstein ND, Kloog Y, Mayrose I, Pupko T, Stein R. Faigenbloom L, et al. Among authors: pupko t. Mol Syst Biol. 2015 Dec 28;11(12):845. doi: 10.15252/msb.20156278. Mol Syst Biol. 2015. PMID: 26712315 Free PMC article.
Pepitope: epitope mapping from affinity-selected peptides.
Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund NT, Bublil EM, Ruppin E, Sharan R, Gershoni JM, Martz E, Pupko T. Mayrose I, et al. Among authors: pupko t. Bioinformatics. 2007 Dec 1;23(23):3244-6. doi: 10.1093/bioinformatics/btm493. Epub 2007 Oct 31. Bioinformatics. 2007. PMID: 17977889 Free PMC article.
133 results