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Year Number of Results
2015 1
2018 6
2019 1
2021 1
2022 1
2023 5
2024 1

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16 results

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Page 1
Single-cell genomics and regulatory networks for 388 human brains.
Emani PS, Liu JJ, Clarke D, Jensen M, Warrell J, Gupta C, Meng R, Lee CY, Xu S, Dursun C, Lou S, Chen Y, Chu Z, Galeev T, Hwang A, Li Y, Ni P, Zhou X; PsychENCODE Consortium; Bakken TE, Bendl J, Bicks L, Chatterjee T, Cheng L, Cheng Y, Dai Y, Duan Z, Flaherty M, Fullard JF, Gancz M, Garrido-Martín D, Gaynor-Gillett S, Grundman J, Hawken N, Henry E, Hoffman GE, Huang A, Jiang Y, Jin T, Jorstad NL, Kawaguchi R, Khullar S, Liu J, Liu J, Liu S, Ma S, Margolis M, Mazariegos S, Moore J, Moran JR, Nguyen E, Phalke N, Pjanic M, Pratt H, Quintero D, Rajagopalan AS, Riesenmy TR, Shedd N, Shi M, Spector M, Terwilliger R, Travaglini KJ, Wamsley B, Wang G, Xia Y, Xiao S, Yang AC, Zheng S, Gandal MJ, Lee D, Lein ES, Roussos P, Sestan N, Weng Z, White KP, Won H, Girgenti MJ, Zhang J, Wang D, Geschwind D, Gerstein M. Emani PS, et al. bioRxiv [Preprint]. 2024 Mar 30:2024.03.18.585576. doi: 10.1101/2024.03.18.585576. bioRxiv. 2024. PMID: 38562822 Free PMC article. Preprint.
The impact of common variants on gene expression in the human brain: from RNA to protein to schizophrenia risk.
Liang Q, Jiang Y, Shieh AW, Zhou D, Chen R, Wang F, Xu M, Niu M, Wang X, Pinto D, Wang Y, Cheng L, Vadukapuram R, Zhang C, Grennan K, Giase G; PsychENCODE Consortium; White KP, Peng J, Li B, Liu C, Chen C, Wang SH. Liang Q, et al. bioRxiv [Preprint]. 2023 Nov 10:2023.06.04.543603. doi: 10.1101/2023.06.04.543603. bioRxiv. 2023. PMID: 37873195 Free PMC article. Preprint.
Single-Nucleus Transcriptome Profiling of Dorsolateral Prefrontal Cortex: Mechanistic Roles for Neuronal Gene Expression, Including the 17q21.31 Locus, in PTSD Stress Response.
Chatzinakos C, Pernia CD, Morrison FG, Iatrou A, McCullough KM, Schuler H, Snijders C, Bajaj T, DiPietro CP, Soliva Estruch M, Gassen NC, Anastasopoulos C, Bharadwaj RA, Bowlby BC, Hartmann J, Maihofer AX, Nievergelt CM, Ressler NM, Wolf EJ; Traumatic Stress Brain Research Group; PTSD BrainOmics Project of the PsychENCODE Consortium; PTSD Working Group of the Psychiatric Genomics Consortium; Carlezon WA Jr, Krystal JH, Kleinman JE, Girgenti MJ, Huber BR, Kellis M, Logue MW, Miller MW, Ressler KJ, Daskalakis NP. Chatzinakos C, et al. Am J Psychiatry. 2023 Oct 1;180(10):739-754. doi: 10.1176/appi.ajp.20220478. Epub 2023 Jul 26. Am J Psychiatry. 2023. PMID: 37491937
Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data.
Dai R, Chu T, Zhang M, Wang X, Jourdon A, Wu F, Mariani J, Vaccarino FM, Lee D, Fullard JF, Hoffman GE, Roussos P, Wang Y, Wang X, Pinto D, Wang SH, Zhang C; PsychENCODE consortium; Chen C, Liu C. Dai R, et al. bioRxiv [Preprint]. 2023 Mar 15:2023.03.13.532468. doi: 10.1101/2023.03.13.532468. bioRxiv. 2023. PMID: 36993743 Free PMC article. Preprint.
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex.
Huuki-Myers L, Spangler A, Eagles N, Montgomery KD, Kwon SH, Guo B, Grant-Peters M, Divecha HR, Tippani M, Sriworarat C, Nguyen AB, Ravichandran P, Tran MN, Seyedian A; PsychENCODE consortium; Hyde TM, Kleinman JE, Battle A, Page SC, Ryten M, Hicks SC, Martinowich K, Collado-Torres L, Maynard KR. Huuki-Myers L, et al. bioRxiv [Preprint]. 2023 Feb 15:2023.02.15.528722. doi: 10.1101/2023.02.15.528722. bioRxiv. 2023. PMID: 36824961 Free PMC article. Preprint.
Chromatin domain alterations linked to 3D genome organization in a large cohort of schizophrenia and bipolar disorder brains.
Girdhar K, Hoffman GE, Bendl J, Rahman S, Dong P, Liao W, Hauberg ME, Sloofman L, Brown L, Devillers O, Kassim BS, Wiseman JR, Park R, Zharovsky E, Jacobov R, Flatow E, Kozlenkov A, Gilgenast T, Johnson JS, Couto L, Peters MA, Phillips-Cremins JE, Hahn CG, Gur RE, Tamminga CA, Lewis DA, Haroutunian V; PsychENCODE Consortium; Dracheva S, Lipska BK, Marenco S, Kundakovic M, Fullard JF, Jiang Y, Roussos P, Akbarian S. Girdhar K, et al. Nat Neurosci. 2022 Apr;25(4):474-483. doi: 10.1038/s41593-022-01032-6. Epub 2022 Mar 24. Nat Neurosci. 2022. PMID: 35332326 Free PMC article.
Shared Molecular Neuropathology Across Major Psychiatric Disorders Parallels Polygenic Overlap.
Gandal MJ, Haney JR, Parikshak NN, Leppa V, Ramaswami G, Hartl C, Schork AJ, Appadurai V, Buil A, Werge TM, Liu C, White KP; CommonMind Consortium, PsychENCODE Consortium, iPSYCH-BROAD Working Group, Steve Horvath; Geschwind DH. Gandal MJ, et al. Focus (Am Psychiatr Publ). 2019 Jan;17(1):66-72. doi: 10.1176/appi.focus.17103. Epub 2019 Jan 7. Focus (Am Psychiatr Publ). 2019. PMID: 32015716 Free PMC article.
Revealing the brain's molecular architecture.
PsychENCODE Consortium. PsychENCODE Consortium. Science. 2018 Dec 14;362(6420):1262-1263. doi: 10.1126/science.362.6420.1262. Science. 2018. PMID: 30545881 No abstract available.
16 results