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A framework to assess the quality and impact of bioinformatics training across ELIXIR.
Gurwitz KT, Singh Gaur P, Bellis LJ, Larcombe L, Alloza E, Balint BL, Botzki A, Dimec J, Dominguez Del Angel V, Fernandes PL, Korpelainen E, Krause R, Kuzak M, Le Pera L, Leskošek B, Lindvall JM, Marek D, Martinez PA, Muyldermans T, Nygård S, Palagi PM, Peterson H, Psomopoulos F, Spiwok V, van Gelder CWG, Via A, Vidak M, Wibberg D, Morgan SL, Rustici G. Gurwitz KT, et al. Among authors: psomopoulos f. PLoS Comput Biol. 2020 Jul 23;16(7):e1007976. doi: 10.1371/journal.pcbi.1007976. eCollection 2020 Jul. PLoS Comput Biol. 2020. PMID: 32702016 Free PMC article.
Ten simple rules for making training materials FAIR.
Garcia L, Batut B, Burke ML, Kuzak M, Psomopoulos F, Arcila R, Attwood TK, Beard N, Carvalho-Silva D, Dimopoulos AC, Del Angel VD, Dumontier M, Gurwitz KT, Krause R, McQuilton P, Le Pera L, Morgan SL, Rauste P, Via A, Kahlem P, Rustici G, van Gelder CWG, Palagi PM. Garcia L, et al. Among authors: psomopoulos f. PLoS Comput Biol. 2020 May 21;16(5):e1007854. doi: 10.1371/journal.pcbi.1007854. eCollection 2020 May. PLoS Comput Biol. 2020. PMID: 32437350 Free PMC article.
DOME: recommendations for supervised machine learning validation in biology.
Walsh I, Fishman D, Garcia-Gasulla D, Titma T, Pollastri G; ELIXIR Machine Learning Focus Group; Harrow J, Psomopoulos FE, Tosatto SCE. Walsh I, et al. Nat Methods. 2021 Oct;18(10):1122-1127. doi: 10.1038/s41592-021-01205-4. Nat Methods. 2021. PMID: 34316068 Free article. No abstract available.
Galaxy Training: A powerful framework for teaching!
Hiltemann S, Rasche H, Gladman S, Hotz HR, Larivière D, Blankenberg D, Jagtap PD, Wollmann T, Bretaudeau A, Goué N, Griffin TJ, Royaux C, Le Bras Y, Mehta S, Syme A, Coppens F, Droesbeke B, Soranzo N, Bacon W, Psomopoulos F, Gallardo-Alba C, Davis J, Föll MC, Fahrner M, Doyle MA, Serrano-Solano B, Fouilloux AC, van Heusden P, Maier W, Clements D, Heyl F; Galaxy Training Network; Grüning B, Batut B. Hiltemann S, et al. Among authors: psomopoulos f. PLoS Comput Biol. 2023 Jan 9;19(1):e1010752. doi: 10.1371/journal.pcbi.1010752. eCollection 2023 Jan. PLoS Comput Biol. 2023. PMID: 36622853 Free PMC article.
Introducing the FAIR Principles for research software.
Barker M, Chue Hong NP, Katz DS, Lamprecht AL, Martinez-Ortiz C, Psomopoulos F, Harrow J, Castro LJ, Gruenpeter M, Martinez PA, Honeyman T. Barker M, et al. Among authors: psomopoulos f. Sci Data. 2022 Oct 14;9(1):622. doi: 10.1038/s41597-022-01710-x. Sci Data. 2022. PMID: 36241754 Free PMC article.
miRkit: R framework analyzing miRNA PCR array data.
Tsagiopoulou M, Togkousidis A, Pechlivanis N, Maniou MC, Batsali A, Matheakakis A, Pontikoglou C, Psomopoulos F. Tsagiopoulou M, et al. Among authors: psomopoulos f. BMC Res Notes. 2021 Sep 26;14(1):376. doi: 10.1186/s13104-021-05788-1. BMC Res Notes. 2021. PMID: 34565441 Free PMC article.
Eleven quick tips for finding research data.
Gregory K, Khalsa SJ, Michener WK, Psomopoulos FE, de Waard A, Wu M. Gregory K, et al. PLoS Comput Biol. 2018 Apr 12;14(4):e1006038. doi: 10.1371/journal.pcbi.1006038. eCollection 2018 Apr. PLoS Comput Biol. 2018. PMID: 29649206 Free PMC article. No abstract available.
55 results