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BioJava 5: A community driven open-source bioinformatics library.
Lafita A, Bliven S, Prlić A, Guzenko D, Rose PW, Bradley A, Pavan P, Myers-Turnbull D, Valasatava Y, Heuer M, Larson M, Burley SK, Duarte JM. Lafita A, et al. Among authors: prlic a. PLoS Comput Biol. 2019 Feb 8;15(2):e1006791. doi: 10.1371/journal.pcbi.1006791. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30735498 Free PMC article.
BioJava: an open-source framework for bioinformatics in 2012.
Prlić A, Yates A, Bliven SE, Rose PW, Jacobsen J, Troshin PV, Chapman M, Gao J, Koh CH, Foisy S, Holland R, Rimsa G, Heuer ML, Brandstätter-Müller H, Bourne PE, Willis S. Prlić A, et al. Bioinformatics. 2012 Oct 15;28(20):2693-5. doi: 10.1093/bioinformatics/bts494. Epub 2012 Aug 9. Bioinformatics. 2012. PMID: 22877863 Free PMC article.
BioJava: an open-source framework for bioinformatics.
Holland RC, Down TA, Pocock M, Prlić A, Huen D, James K, Foisy S, Dräger A, Yates A, Heuer M, Schreiber MJ. Holland RC, et al. Among authors: prlic a. Bioinformatics. 2008 Sep 15;24(18):2096-7. doi: 10.1093/bioinformatics/btn397. Epub 2008 Aug 8. Bioinformatics. 2008. PMID: 18689808 Free PMC article.
Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
Prlic A, Kalro T, Bhattacharya R, Christie C, Burley SK, Rose PW. Prlic A, et al. Bioinformatics. 2016 Dec 15;32(24):3833-3835. doi: 10.1093/bioinformatics/btw547. Epub 2016 Aug 22. Bioinformatics. 2016. PMID: 27551105 Free PMC article.
To allow an interpretation of how PDB data relates to other publicly available annotations, we developed a novel data integration platform that maps 3D structural information across various datasets. ...AVAILABILITY AND IMPLEMENTATION: The new views are available from http …
To allow an interpretation of how PDB data relates to other publicly available annotations, we developed a novel data integration pla …
The RCSB protein data bank: integrative view of protein, gene and 3D structural information.
Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK. Rose PW, et al. Among authors: prlic a. Nucleic Acids Res. 2017 Jan 4;45(D1):D271-D281. doi: 10.1093/nar/gkw1000. Epub 2016 Oct 27. Nucleic Acids Res. 2017. PMID: 27794042 Free PMC article.
53 results