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IsoVis - a webserver for visualization and annotation of alternative RNA isoforms.
Nucleic Acids Res. 2024 May 6:gkae343. doi: 10.1093/nar/gkae343. Online ahead of print.
Nucleic Acids Res. 2024.
PMID: 38709877
Control of Neuronal Survival and Development Using Conductive Diamond.
Falahatdoost S, Prawer YDJ, Peng D, Chambers A, Zhan H, Pope L, Stacey A, Ahnood A, Al Hashem HN, De León SE, Garrett DJ, Fox K, Clark MB, Ibbotson MR, Prawer S, Tong W.
Falahatdoost S, et al. Among authors: prawer ydj.
ACS Appl Mater Interfaces. 2024 Jan 31;16(4):4361-4374. doi: 10.1021/acsami.3c14680. Epub 2024 Jan 17.
ACS Appl Mater Interfaces. 2024.
PMID: 38232177
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Pervasive effects of RNA degradation on Nanopore direct RNA sequencing.
Prawer YDJ, Gleeson J, De Paoli-Iseppi R, Clark MB.
Prawer YDJ, et al.
NAR Genom Bioinform. 2023 Jun 9;5(2):lqad060. doi: 10.1093/nargab/lqad060. eCollection 2023 Jun.
NAR Genom Bioinform. 2023.
PMID: 37305170
Free PMC article.
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Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE.
You Y, Prawer YDJ, De Paoli-Iseppi R, Hunt CPJ, Parish CL, Shim H, Clark MB.
You Y, et al. Among authors: prawer ydj.
Genome Biol. 2023 Apr 6;24(1):66. doi: 10.1186/s13059-023-02907-y.
Genome Biol. 2023.
PMID: 37024980
Free PMC article.
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Accurate expression quantification from nanopore direct RNA sequencing with NanoCount.
Gleeson J, Leger A, Prawer YDJ, Lane TA, Harrison PJ, Haerty W, Clark MB.
Gleeson J, et al. Among authors: prawer ydj.
Nucleic Acids Res. 2022 Feb 28;50(4):e19. doi: 10.1093/nar/gkab1129.
Nucleic Acids Res. 2022.
PMID: 34850115
Free PMC article.
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Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing.
Tian L, Jabbari JS, Thijssen R, Gouil Q, Amarasinghe SL, Voogd O, Kariyawasam H, Du MRM, Schuster J, Wang C, Su S, Dong X, Law CW, Lucattini A, Prawer YDJ, Collar-Fernández C, Chung JD, Naim T, Chan A, Ly CH, Lynch GS, Ryall JG, Anttila CJA, Peng H, Anderson MA, Flensburg C, Majewski I, Roberts AW, Huang DCS, Clark MB, Ritchie ME.
Tian L, et al. Among authors: prawer ydj.
Genome Biol. 2021 Nov 11;22(1):310. doi: 10.1186/s13059-021-02525-6.
Genome Biol. 2021.
PMID: 34763716
Free PMC article.
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The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools.
Dong X, Tian L, Gouil Q, Kariyawasam H, Su S, De Paoli-Iseppi R, Prawer YDJ, Clark MB, Breslin K, Iminitoff M, Blewitt ME, Law CW, Ritchie ME.
Dong X, et al. Among authors: prawer ydj.
NAR Genom Bioinform. 2021 Apr 26;3(2):lqab028. doi: 10.1093/nargab/lqab028. eCollection 2021 Jun.
NAR Genom Bioinform. 2021.
PMID: 33937765
Free PMC article.
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Major SCP/TAPS protein expansion in Lucilia cuprina is associated with novel tandem array organisation and domain architecture.
Prawer YDJ, Stroehlein AJ, Young ND, Kapoor S, Hall RS, Ghazali R, Batterham P, Gasser RB, Perry T, Anstead CA.
Prawer YDJ, et al.
Parasit Vectors. 2020 Nov 27;13(1):598. doi: 10.1186/s13071-020-04476-6.
Parasit Vectors. 2020.
PMID: 33246493
Free PMC article.
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