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PanEffect: a pan-genome visualization tool for variant effects in maize.
Andorf CM, Haley OC, Hayford RK, Portwood JL 2nd, Harding S, Sen S, Cannon EK, Gardiner JM, Kim HS, Woodhouse MR. Andorf CM, et al. Among authors: portwood jl 2nd. Bioinformatics. 2024 Feb 1;40(2):btae073. doi: 10.1093/bioinformatics/btae073. Bioinformatics. 2024. PMID: 38337024 Free PMC article.
A pan-genomic approach to genome databases using maize as a model system.
Woodhouse MR, Cannon EK, Portwood JL 2nd, Harper LC, Gardiner JM, Schaeffer ML, Andorf CM. Woodhouse MR, et al. Among authors: portwood jl 2nd. BMC Plant Biol. 2021 Aug 20;21(1):385. doi: 10.1186/s12870-021-03173-5. BMC Plant Biol. 2021. PMID: 34416864 Free PMC article.
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.
Hufford MB, Seetharam AS, Woodhouse MR, Chougule KM, Ou S, Liu J, Ricci WA, Guo T, Olson A, Qiu Y, Della Coletta R, Tittes S, Hudson AI, Marand AP, Wei S, Lu Z, Wang B, Tello-Ruiz MK, Piri RD, Wang N, Kim DW, Zeng Y, O'Connor CH, Li X, Gilbert AM, Baggs E, Krasileva KV, Portwood JL 2nd, Cannon EKS, Andorf CM, Manchanda N, Snodgrass SJ, Hufnagel DE, Jiang Q, Pedersen S, Syring ML, Kudrna DA, Llaca V, Fengler K, Schmitz RJ, Ross-Ibarra J, Yu J, Gent JI, Hirsch CN, Ware D, Dawe RK. Hufford MB, et al. Among authors: portwood jl 2nd. Science. 2021 Aug 6;373(6555):655-662. doi: 10.1126/science.abg5289. Science. 2021. PMID: 34353948 Free PMC article.
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database.
Shamimuzzaman M, Gardiner JM, Walsh AT, Triant DA, Le Tourneau JJ, Tayal A, Unni DR, Nguyen HN, Portwood JL 2nd, Cannon EKS, Andorf CM, Elsik CG. Shamimuzzaman M, et al. Among authors: portwood jl 2nd. Front Plant Sci. 2020 Oct 22;11:592730. doi: 10.3389/fpls.2020.592730. eCollection 2020. Front Plant Sci. 2020. PMID: 33193550 Free PMC article.
MaizeDIG: Maize Database of Images and Genomes.
Cho KT, Portwood JL 2nd, Gardiner JM, Harper LC, Lawrence-Dill CJ, Friedberg I, Andorf CM. Cho KT, et al. Among authors: portwood jl 2nd. Front Plant Sci. 2019 Aug 28;10:1050. doi: 10.3389/fpls.2019.01050. eCollection 2019. Front Plant Sci. 2019. PMID: 31555312 Free PMC article.
MaizeGDB 2018: the maize multi-genome genetics and genomics database.
Portwood JL 2nd, Woodhouse MR, Cannon EK, Gardiner JM, Harper LC, Schaeffer ML, Walsh JR, Sen TZ, Cho KT, Schott DA, Braun BL, Dietze M, Dunfee B, Elsik CG, Manchanda N, Coe E, Sachs M, Stinard P, Tolbert J, Zimmerman S, Andorf CM. Portwood JL 2nd, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D1146-D1154. doi: 10.1093/nar/gky1046. Nucleic Acids Res. 2019. PMID: 30407532 Free PMC article.
13 results