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Page 1
transPLANT Resources for Triticeae Genomic Data.
Spannagl M, Alaux M, Lange M, Bolser DM, Bader KC, Letellier T, Kimmel E, Flores R, Pommier C, Kerhornou A, Walts B, Nussbaumer T, Grabmuller C, Chen J, Colmsee C, Beier S, Mascher M, Schmutzer T, Arend D, Thanki A, Ramirez-Gonzalez R, Ayling M, Ayling S, Caccamo M, Mayer KF, Scholz U, Steinbach D, Quesneville H, Kersey PJ. Spannagl M, et al. Among authors: pommier c. Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.06.0038. Plant Genome. 2016. PMID: 27898761 Free article. Review.
GnpIS: an information system to integrate genetic and genomic data from plants and fungi.
Steinbach D, Alaux M, Amselem J, Choisne N, Durand S, Flores R, Keliet AO, Kimmel E, Lapalu N, Luyten I, Michotey C, Mohellibi N, Pommier C, Reboux S, Valdenaire D, Verdelet D, Quesneville H. Steinbach D, et al. Among authors: pommier c. Database (Oxford). 2013 Aug 19;2013:bat058. doi: 10.1093/database/bat058. Print 2013. Database (Oxford). 2013. PMID: 23959375 Free PMC article.
Towards recommendations for metadata and data handling in plant phenotyping.
Krajewski P, Chen D, Ćwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S. Krajewski P, et al. Among authors: pommier c. J Exp Bot. 2015 Sep;66(18):5417-27. doi: 10.1093/jxb/erv271. Epub 2015 Jun 4. J Exp Bot. 2015. PMID: 26044092
Measures for interoperability of phenotypic data: minimum information requirements and formatting.
Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone SA, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P. Ćwiek-Kupczyńska H, et al. Among authors: pommier c. Plant Methods. 2016 Nov 9;12:44. doi: 10.1186/s13007-016-0144-4. eCollection 2016. Plant Methods. 2016. PMID: 27843484 Free PMC article.
Mining Plant Genomic and Genetic Data Using the GnpIS Information System.
Adam-Blondon AF, Alaux M, Durand S, Letellier T, Merceron G, Mohellibi N, Pommier C, Steinbach D, Alfama F, Amselem J, Charruaud D, Choisne N, Flores R, Guerche C, Jamilloux V, Kimmel E, Lapalu N, Loaec M, Michotey C, Quesneville H. Adam-Blondon AF, et al. Among authors: pommier c. Methods Mol Biol. 2017;1533:103-117. doi: 10.1007/978-1-4939-6658-5_5. Methods Mol Biol. 2017. PMID: 27987166
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.
Alaux M, Rogers J, Letellier T, Flores R, Alfama F, Pommier C, Mohellibi N, Durand S, Kimmel E, Michotey C, Guerche C, Loaec M, Lainé M, Steinbach D, Choulet F, Rimbert H, Leroy P, Guilhot N, Salse J, Feuillet C; International Wheat Genome Sequencing Consortium; Paux E, Eversole K, Adam-Blondon AF, Quesneville H. Alaux M, et al. Among authors: pommier c. Genome Biol. 2018 Aug 17;19(1):111. doi: 10.1186/s13059-018-1491-4. Genome Biol. 2018. PMID: 30115101 Free PMC article.
RepetDB: a unified resource for transposable element references.
Amselem J, Cornut G, Choisne N, Alaux M, Alfama-Depauw F, Jamilloux V, Maumus F, Letellier T, Luyten I, Pommier C, Adam-Blondon AF, Quesneville H. Amselem J, et al. Among authors: pommier c. Mob DNA. 2019 Jan 29;10:6. doi: 10.1186/s13100-019-0150-y. eCollection 2019. Mob DNA. 2019. PMID: 30719103 Free PMC article.
Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS.
Pommier C, Michotey C, Cornut G, Roumet P, Duchêne E, Flores R, Lebreton A, Alaux M, Durand S, Kimmel E, Letellier T, Merceron G, Laine M, Guerche C, Loaec M, Steinbach D, Laporte MA, Arnaud E, Quesneville H, Adam-Blondon AF. Pommier C, et al. Plant Phenomics. 2019 Apr 30;2019:1671403. doi: 10.34133/2019/1671403. eCollection 2019. Plant Phenomics. 2019. PMID: 33313522 Free PMC article.
SyntenyViewer: a comparative genomics-driven translational research tool.
Flores R, Huneau C, Burlot L, Lainé M, Kimmel E, Pommier C, Alaux M, Adam-Blondon AF, Pont C, Quesneville H, Salse J. Flores R, et al. Among authors: pommier c. Database (Oxford). 2023 May 9;2023:baad027. doi: 10.1093/database/baad027. Database (Oxford). 2023. PMID: 37159239 Free PMC article.
78 results