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lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements.
Gordon MG, Inoue F, Martin B, Schubach M, Agarwal V, Whalen S, Feng S, Zhao J, Ashuach T, Ziffra R, Kreimer A, Georgakopoulos-Soares I, Yosef N, Ye CJ, Pollard KS, Shendure J, Kircher M, Ahituv N. Gordon MG, et al. Among authors: pollard ks. Nat Protoc. 2020 Aug;15(8):2387-2412. doi: 10.1038/s41596-020-0333-5. Epub 2020 Jul 8. Nat Protoc. 2020. PMID: 32641802 Free PMC article.
Integrating diverse datasets improves developmental enhancer prediction.
Erwin GD, Oksenberg N, Truty RM, Kostka D, Murphy KK, Ahituv N, Pollard KS, Capra JA. Erwin GD, et al. Among authors: pollard ks. PLoS Comput Biol. 2014 Jun 26;10(6):e1003677. doi: 10.1371/journal.pcbi.1003677. eCollection 2014 Jun. PLoS Comput Biol. 2014. PMID: 24967590 Free PMC article.
Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus.
Booker BM, Friedrich T, Mason MK, VanderMeer JE, Zhao J, Eckalbar WL, Logan M, Illing N, Pollard KS, Ahituv N. Booker BM, et al. Among authors: pollard ks. PLoS Genet. 2016 Mar 28;12(3):e1005738. doi: 10.1371/journal.pgen.1005738. eCollection 2016 Mar. PLoS Genet. 2016. PMID: 27019019 Free PMC article.
Transcriptomic and epigenomic characterization of the developing bat wing.
Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, Wall JD, Illing N, Ahituv N. Eckalbar WL, et al. Among authors: pollard ks. Nat Genet. 2016 May;48(5):528-36. doi: 10.1038/ng.3537. Epub 2016 Mar 28. Nat Genet. 2016. PMID: 27019111 Free PMC article.
Unboxing cluster heatmaps.
Engle S, Whalen S, Joshi A, Pollard KS. Engle S, et al. Among authors: pollard ks. BMC Bioinformatics. 2017 Feb 15;18(Suppl 2):63. doi: 10.1186/s12859-016-1442-6. BMC Bioinformatics. 2017. PMID: 28251868 Free PMC article.
213 results