Pluta R - Search Results

1

Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes.

Ruiz L, Kaczmarska Z, Gomes T, Aragon E, Torner C, Freier R, Baginski B, Martin-Malpartida P, de Martin Garrido N, Marquez JA, Cordeiro TN, Pluta R, Macias MJ. Ruiz L, et al. Among authors: pluta r. Comput Struct Biotechnol J. 2021 Jan 6;19:632-646. doi: 10.1016/j.csbj.2020.12.044. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 33510867 Free PMC article.

2

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information.

Boccaletto P, Magnus M, Almeida C, Zyla A, Astha A, Pluta R, Baginski B, Jankowska E, Dunin-Horkawicz S, Wirecki TK, Boniecki MJ, Stefaniak F, Bujnicki JM. Boccaletto P, et al. Among authors: pluta r. Nucleic Acids Res. 2018 Jan 4;46(D1):D202-D205. doi: 10.1093/nar/gkx966. Nucleic Acids Res. 2018. PMID: 29069520 Free PMC article.

3

Structures of the germline-specific Deadhead and thioredoxin T proteins from Drosophila melanogaster reveal unique features among thioredoxins.

Freier R, Aragón E, Bagiński B, Pluta R, Martin-Malpartida P, Ruiz L, Condeminas M, Gonzalez C, Macias MJ. Freier R, et al. Among authors: pluta r. IUCrJ. 2021 Feb 11;8(Pt 2):281-294. doi: 10.1107/S2052252521000221. eCollection 2021 Mar 1. IUCrJ. 2021. PMID: 33708404 Free PMC article.

4

Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1.

Pluta R, Aragón E, Prescott NA, Ruiz L, Mees RA, Baginski B, Flood JR, Martin-Malpartida P, Massagué J, David Y, Macias MJ. Pluta R, et al. Nat Commun. 2022 Nov 26;13(1):7279. doi: 10.1038/s41467-022-34925-y. Nat Commun. 2022. PMID: 36435807 Free PMC article.

5

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers.

Miao Z, Adamiak RW, Antczak M, Boniecki MJ, Bujnicki J, Chen SJ, Cheng CY, Cheng Y, Chou FC, Das R, Dokholyan NV, Ding F, Geniesse C, Jiang Y, Joshi A, Krokhotin A, Magnus M, Mailhot O, Major F, Mann TH, Piątkowski P, Pluta R, Popenda M, Sarzynska J, Sun L, Szachniuk M, Tian S, Wang J, Wang J, Watkins AM, Wiedemann J, Xiao Y, Xu X, Yesselman JD, Zhang D, Zhang Y, Zhang Z, Zhao C, Zhao P, Zhou Y, Zok T, Żyła A, Ren A, Batey RT, Golden BL, Huang L, Lilley DM, Liu Y, Patel DJ, Westhof E. Miao Z, et al. Among authors: pluta r. RNA. 2020 Aug;26(8):982-995. doi: 10.1261/rna.075341.120. Epub 2020 May 5. RNA. 2020. PMID: 32371455 Free PMC article.

6

Antisense and yet sensitive: Copy number control of rolling circle-replicating plasmids by small RNAs.

Pluta R, Espinosa M. Pluta R, et al. Wiley Interdiscip Rev RNA. 2018 Nov;9(6):e1500. doi: 10.1002/wrna.1500. Epub 2018 Aug 3. Wiley Interdiscip Rev RNA. 2018. PMID: 30074293 Review.

7

Functional properties and structural requirements of the plasmid pMV158-encoded MobM relaxase domain.

Fernández-López C, Pluta R, Pérez-Luque R, Rodríguez-González L, Espinosa M, Coll M, Lorenzo-Díaz F, Boer DR. Fernández-López C, et al. Among authors: pluta r. J Bacteriol. 2013 Jul;195(13):3000-8. doi: 10.1128/JB.02264-12. Epub 2013 Apr 26. J Bacteriol. 2013. PMID: 23625844 Free PMC article.

8

Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.

Pluta R, Boer DR, Lorenzo-Díaz F, Russi S, Gómez H, Fernández-López C, Pérez-Luque R, Orozco M, Espinosa M, Coll M. Pluta R, et al. Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):E6526-E6535. doi: 10.1073/pnas.1702971114. Epub 2017 Jul 24. Proc Natl Acad Sci U S A. 2017. PMID: 28739894 Free PMC article.

9

Recognition of Streptococcal Promoters by the Pneumococcal SigA Protein.

Solano-Collado V, Ruiz-Cruz S, Lorenzo-Díaz F, Pluta R, Espinosa M, Bravo A. Solano-Collado V, et al. Among authors: pluta r. Front Mol Biosci. 2021 Jun 24;8:666504. doi: 10.3389/fmolb.2021.666504. eCollection 2021. Front Mol Biosci. 2021. PMID: 34250014 Free PMC article.

10

The Facts and Family Secrets of Plasmids That Replicate via the Rolling-Circle Mechanism.

Garcillán-Barcia MP, Pluta R, Lorenzo-Díaz F, Bravo A, Espinosa M. Garcillán-Barcia MP, et al. Among authors: pluta r. Microbiol Mol Biol Rev. 2022 Mar 16;86(1):e0022220. doi: 10.1128/MMBR.00222-20. Epub 2021 Dec 8. Microbiol Mol Biol Rev. 2022. PMID: 34878299 Free PMC article. Review.

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