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The cis-regulatory dynamics of embryonic development at single-cell resolution.
Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. Cusanovich DA, et al. Among authors: pliner ha. Nature. 2018 Mar 22;555(7697):538-542. doi: 10.1038/nature25981. Epub 2018 Mar 14. Nature. 2018. PMID: 29539636 Free PMC article.
Reversed graph embedding resolves complex single-cell trajectories.
Qiu X, Mao Q, Tang Y, Wang L, Chawla R, Pliner HA, Trapnell C. Qiu X, et al. Among authors: pliner ha. Nat Methods. 2017 Oct;14(10):979-982. doi: 10.1038/nmeth.4402. Epub 2017 Aug 21. Nat Methods. 2017. PMID: 28825705 Free PMC article.
A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.
Cusanovich DA, Hill AJ, Aghamirzaie D, Daza RM, Pliner HA, Berletch JB, Filippova GN, Huang X, Christiansen L, DeWitt WS, Lee C, Regalado SG, Read DF, Steemers FJ, Disteche CM, Trapnell C, Shendure J. Cusanovich DA, et al. Among authors: pliner ha. Cell. 2018 Aug 23;174(5):1309-1324.e18. doi: 10.1016/j.cell.2018.06.052. Epub 2018 Aug 2. Cell. 2018. PMID: 30078704 Free PMC article.
Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
Cao J, Cusanovich DA, Ramani V, Aghamirzaie D, Pliner HA, Hill AJ, Daza RM, McFaline-Figueroa JL, Packer JS, Christiansen L, Steemers FJ, Adey AC, Trapnell C, Shendure J. Cao J, et al. Among authors: pliner ha. Science. 2018 Sep 28;361(6409):1380-1385. doi: 10.1126/science.aau0730. Epub 2018 Aug 30. Science. 2018. PMID: 30166440 Free PMC article.
Massively multiplex chemical transcriptomics at single-cell resolution.
Srivatsan SR, McFaline-Figueroa JL, Ramani V, Saunders L, Cao J, Packer J, Pliner HA, Jackson DL, Daza RM, Christiansen L, Zhang F, Steemers F, Shendure J, Trapnell C. Srivatsan SR, et al. Among authors: pliner ha. Science. 2020 Jan 3;367(6473):45-51. doi: 10.1126/science.aax6234. Epub 2019 Dec 5. Science. 2020. PMID: 31806696 Free PMC article.
A human cell atlas of fetal chromatin accessibility.
Domcke S, Hill AJ, Daza RM, Cao J, O'Day DR, Pliner HA, Aldinger KA, Pokholok D, Zhang F, Milbank JH, Zager MA, Glass IA, Steemers FJ, Doherty D, Trapnell C, Cusanovich DA, Shendure J. Domcke S, et al. Among authors: pliner ha. Science. 2020 Nov 13;370(6518):eaba7612. doi: 10.1126/science.aba7612. Science. 2020. PMID: 33184180 Free PMC article.
26 results