Pirola Y - Search Results

1

Transcriptional profiling of immortalized and K-ras-transformed mouse fibroblasts upon PKA stimulation by forskolin in low glucose availability.

Chiaradonna F, Pirola Y, Ricciardiello F, Palorini R. Chiaradonna F, et al. Among authors: pirola y. Genom Data. 2016 Jul 7;9:100-4. doi: 10.1016/j.gdata.2016.07.004. eCollection 2016 Sep. Genom Data. 2016. PMID: 27486565 Free PMC article.

2

Protein Kinase A Activation Promotes Cancer Cell Resistance to Glucose Starvation and Anoikis.

Palorini R, Votta G, Pirola Y, De Vitto H, De Palma S, Airoldi C, Vasso M, Ricciardiello F, Lombardi PP, Cirulli C, Rizzi R, Nicotra F, Hiller K, Gelfi C, Alberghina L, Chiaradonna F. Palorini R, et al. Among authors: pirola y. PLoS Genet. 2016 Mar 15;12(3):e1005931. doi: 10.1371/journal.pgen.1005931. eCollection 2016 Mar. PLoS Genet. 2016. PMID: 26978032 Free PMC article.

3

Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations.

Biscarini F, Schwarzenbacher H, Pausch H, Nicolazzi EL, Pirola Y, Biffani S. Biscarini F, et al. Among authors: pirola y. BMC Genomics. 2016 Nov 3;17(1):857. doi: 10.1186/s12864-016-3218-9. BMC Genomics. 2016. PMID: 27809787 Free PMC article.

4

PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text.

Pirola Y, Rizzi R, Picardi E, Pesole G, Della Vedova G, Bonizzoni P. Pirola Y, et al. BMC Bioinformatics. 2012 Apr 12;13 Suppl 5(Suppl 5):S2. doi: 10.1186/1471-2105-13-S5-S2. BMC Bioinformatics. 2012. PMID: 22537006 Free PMC article.

5

Modeling alternative splicing variants from RNA-Seq data with isoform graphs.

Beretta S, Bonizzoni P, Vedova GD, Pirola Y, Rizzi R. Beretta S, et al. Among authors: pirola y. J Comput Biol. 2014 Jan;21(1):16-40. doi: 10.1089/cmb.2013.0112. Epub 2013 Nov 7. J Comput Biol. 2014. PMID: 24200390 Free PMC article.

6

Transcriptome assembly and alternative splicing analysis.

Bonizzoni P, Della Vedova G, Pesole G, Picardi E, Pirola Y, Rizzi R. Bonizzoni P, et al. Among authors: pirola y. Methods Mol Biol. 2015;1269:173-88. doi: 10.1007/978-1-4939-2291-8_11. Methods Mol Biol. 2015. PMID: 25577379

7

LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly.

Bonizzoni P, Vedova GD, Pirola Y, Previtali M, Rizzi R. Bonizzoni P, et al. Among authors: pirola y. J Comput Biol. 2016 Mar;23(3):137-49. doi: 10.1089/cmb.2015.0172. J Comput Biol. 2016. PMID: 26953874

8

FSG: Fast String Graph Construction for De Novo Assembly.

Bonizzoni P, Vedova GD, Pirola Y, Previtali M, Rizzi R. Bonizzoni P, et al. Among authors: pirola y. J Comput Biol. 2017 Oct;24(10):953-968. doi: 10.1089/cmb.2017.0089. Epub 2017 Jul 17. J Comput Biol. 2017. PMID: 28715269 Free article.

9

Multithread Multistring Burrows-Wheeler Transform and Longest Common Prefix Array.

Bonizzoni P, Della Vedova G, Pirola Y, Previtali M, Rizzi R. Bonizzoni P, et al. Among authors: pirola y. J Comput Biol. 2019 Sep;26(9):948-961. doi: 10.1089/cmb.2018.0230. Epub 2019 May 29. J Comput Biol. 2019. PMID: 31140836

10

Shark: fishing relevant reads in an RNA-Seq sample.

Denti L, Pirola Y, Previtali M, Ceccato T, Della Vedova G, Rizzi R, Bonizzoni P. Denti L, et al. Among authors: pirola y. Bioinformatics. 2021 May 1;37(4):464-472. doi: 10.1093/bioinformatics/btaa779. Bioinformatics. 2021. PMID: 32926128 Free PMC article.

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