Pinney J - Search Results

1

Derivative processes for modelling metabolic fluxes.

Zurauskienė J, Kirk P, Thorne T, Pinney J, Stumpf M. Zurauskienė J, et al. Among authors: pinney j. Bioinformatics. 2014 Jul 1;30(13):1892-8. doi: 10.1093/bioinformatics/btu069. Epub 2014 Feb 26. Bioinformatics. 2014. PMID: 24578401 Free PMC article.

2

The evolution of the phage shock protein response system: interplay between protein function, genomic organization, and system function.

Huvet M, Toni T, Sheng X, Thorne T, Jovanovic G, Engl C, Buck M, Pinney JW, Stumpf MP. Huvet M, et al. Among authors: pinney jw. Mol Biol Evol. 2011 Mar;28(3):1141-55. doi: 10.1093/molbev/msq301. Epub 2010 Nov 8. Mol Biol Evol. 2011. PMID: 21059793 Free PMC article.

3

Evolving proteins at Darwin's bicentenary.

Pinney JW, Stumpf MP. Pinney JW, et al. Genome Biol. 2009;10(4):307. doi: 10.1186/gb-2009-10-4-307. Epub 2009 Apr 17. Genome Biol. 2009. PMID: 19435482 Free PMC article.

4

Evolutionary characteristics of bacterial two-component systems.

Sheng X, Huvet M, Pinney JW, Stumpf MP. Sheng X, et al. Adv Exp Med Biol. 2012;751:121-37. doi: 10.1007/978-1-4614-3567-9_6. Adv Exp Med Biol. 2012. PMID: 22821456

5

Simple topological properties predict functional misannotations in a metabolic network.

Liberal R, Pinney JW. Liberal R, et al. Bioinformatics. 2013 Jul 1;29(13):i154-61. doi: 10.1093/bioinformatics/btt236. Bioinformatics. 2013. PMID: 23812979 Free PMC article.

6

PathwayBooster: a tool to support the curation of metabolic pathways.

Liberal R, Lisowska BK, Leak DJ, Pinney JW. Liberal R, et al. Among authors: pinney jw. BMC Bioinformatics. 2015 Mar 15;16(1):86. doi: 10.1186/s12859-014-0447-2. BMC Bioinformatics. 2015. PMID: 25887214 Free PMC article.

7

AMBIENT: Active Modules for Bipartite Networks--using high-throughput transcriptomic data to dissect metabolic response.

Bryant WA, Sternberg MJ, Pinney JW. Bryant WA, et al. Among authors: pinney jw. BMC Syst Biol. 2013 Mar 25;7:26. doi: 10.1186/1752-0509-7-26. BMC Syst Biol. 2013. PMID: 23531303 Free PMC article.

8

Analysis of metabolic evolution in bacteria using whole-genome metabolic models.

Bryant WA, Faruqi AA, Pinney JW. Bryant WA, et al. J Comput Biol. 2013 Oct;20(10):755-64. doi: 10.1089/cmb.2013.0079. Epub 2013 Aug 31. J Comput Biol. 2013. PMID: 23992299 Free PMC article.

9

Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules.

Williams KJ, Bryant WA, Jenkins VA, Barton GR, Witney AA, Pinney JW, Robertson BD. Williams KJ, et al. Among authors: pinney jw. BMC Genomics. 2013 Jul 2;14:436. doi: 10.1186/1471-2164-14-436. BMC Genomics. 2013. PMID: 23819599 Free PMC article.

10

The evolution of protein domain repertoires: Shedding light on the origins of the Herpesviridae family.

Brito AF, Pinney JW. Brito AF, et al. Virus Evol. 2020 Feb 5;6(1):veaa001. doi: 10.1093/ve/veaa001. eCollection 2020 Jan. Virus Evol. 2020. PMID: 32042448 Free PMC article. Review.

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