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NCI Cancer Research Data Commons: Lessons Learned and Future State.
Kim E, Davidsen T, Davis-Dusenbery BN, Baumann A, Maggio A, Chen Z, Meerzaman D, Casas-Silva E, Pot D, Pihl T, Otridge J, Shalley E; CRDC Program; Barnholtz-Sloan JS, Kerlavage AR. Kim E, et al. Among authors: pihl t. Cancer Res. 2024 May 2;84(9):1404-1409. doi: 10.1158/0008-5472.CAN-23-2730. Cancer Res. 2024. PMID: 38488510 Free PMC article. Review.
NCI Cancer Research Data Commons: Cloud-Based Analytic Resources.
Pot D, Worman Z, Baumann A, Pathak S, Beck R, Beck E, Thayer K, Davidsen TM, Kim E, Davis-Dusenbery B, Otridge J, Pihl T; CRDC Program; Barnholtz-Sloan JS, Kerlavage AR. Pot D, et al. Among authors: pihl t. Cancer Res. 2024 May 2;84(9):1396-1403. doi: 10.1158/0008-5472.CAN-23-2657. Cancer Res. 2024. PMID: 38488504 Free PMC article. Review.
NCI Cancer Research Data Commons: Core Standards and Services.
Brady A, Charbonneau A, Grossman RL, Creasy HH, Renner R, Pihl T, Otridge J, Kim E; CRDC Program; Barnholtz-Sloan JS, Kerlavage AR. Brady A, et al. Among authors: pihl t. Cancer Res. 2024 May 2;84(9):1384-1387. doi: 10.1158/0008-5472.CAN-23-2655. Cancer Res. 2024. PMID: 38488505 Free PMC article.
NCI Cancer Research Data Commons: Resources to Share Key Cancer Data.
Wang Z, Davidsen TM, Kuffel GR, Addepalli K, Bell A, Casas-Silva E, Dingerdissen H, Farahani K, Fedorov A, Gaheen S, Grossman RL, Kikinis R, Kim E, Otridge J, Pihl T, Porter M, Rodriguez H, Staudt LM, Thangudu RR, Venkatachari S, Zenklusen JC, Zhang X; CRDC Program; Barnholtz-Sloan JS, Kerlavage AR. Wang Z, et al. Among authors: pihl t. Cancer Res. 2024 May 2;84(9):1388-1395. doi: 10.1158/0008-5472.CAN-23-2468. Cancer Res. 2024. PMID: 38488507 Free PMC article. Review.
NCI Imaging Data Commons.
Fedorov A, Longabaugh WJR, Pot D, Clunie DA, Pieper S, Aerts HJWL, Homeyer A, Lewis R, Akbarzadeh A, Bontempi D, Clifford W, Herrmann MD, Höfener H, Octaviano I, Osborne C, Paquette S, Petts J, Punzo D, Reyes M, Schacherer DP, Tian M, White G, Ziegler E, Shmulevich I, Pihl T, Wagner U, Farahani K, Kikinis R. Fedorov A, et al. Among authors: pihl t. Cancer Res. 2021 Aug 15;81(16):4188-4193. doi: 10.1158/0008-5472.CAN-21-0950. Epub 2021 Jun 15. Cancer Res. 2021. PMID: 34185678 Free PMC article.
The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research.
Reynolds SM, Miller M, Lee P, Leinonen K, Paquette SM, Rodebaugh Z, Hahn A, Gibbs DL, Slagel J, Longabaugh WJ, Dhankani V, Reyes M, Pihl T, Backus M, Bookman M, Deflaux N, Bingham J, Pot D, Shmulevich I. Reynolds SM, et al. Among authors: pihl t. Cancer Res. 2017 Nov 1;77(21):e7-e10. doi: 10.1158/0008-5472.CAN-17-0617. Cancer Res. 2017. PMID: 29092928 Free PMC article.
A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers.
Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Williams C, Mestdagh P, Gunaratne PH, Yau C, Bowlby R, Robertson AG, Tiezzi DG, Wang C, Cherniack AD, Godwin AK, Kuderer NM, Rader JS, Zuna RE, Sood AK, Lazar AJ, Ojesina AI, Adebamowo C, Adebamowo SN, Baggerly KA, Chen TW, Chiu HS, Lefever S, Liu L, MacKenzie K, Orsulic S, Roszik J, Shelley CS, Song Q, Vellano CP, Wentzensen N; Cancer Genome Atlas Research Network; Weinstein JN, Mills GB, Levine DA, Akbani R. Berger AC, et al. Cancer Cell. 2018 Apr 9;33(4):690-705.e9. doi: 10.1016/j.ccell.2018.03.014. Epub 2018 Apr 2. Cancer Cell. 2018. PMID: 29622464 Free PMC article.
The somatic genomic landscape of glioblastoma.
Brennan CW, Verhaak RG, McKenna A, Campos B, Noushmehr H, Salama SR, Zheng S, Chakravarty D, Sanborn JZ, Berman SH, Beroukhim R, Bernard B, Wu CJ, Genovese G, Shmulevich I, Barnholtz-Sloan J, Zou L, Vegesna R, Shukla SA, Ciriello G, Yung WK, Zhang W, Sougnez C, Mikkelsen T, Aldape K, Bigner DD, Van Meir EG, Prados M, Sloan A, Black KL, Eschbacher J, Finocchiaro G, Friedman W, Andrews DW, Guha A, Iacocca M, O'Neill BP, Foltz G, Myers J, Weisenberger DJ, Penny R, Kucherlapati R, Perou CM, Hayes DN, Gibbs R, Marra M, Mills GB, Lander E, Spellman P, Wilson R, Sander C, Weinstein J, Meyerson M, Gabriel S, Laird PW, Haussler D, Getz G, Chin L; TCGA Research Network. Brennan CW, et al. Cell. 2013 Oct 10;155(2):462-77. doi: 10.1016/j.cell.2013.09.034. Cell. 2013. PMID: 24120142 Free PMC article.
Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma.
Ceccarelli M, Barthel FP, Malta TM, Sabedot TS, Salama SR, Murray BA, Morozova O, Newton Y, Radenbaugh A, Pagnotta SM, Anjum S, Wang J, Manyam G, Zoppoli P, Ling S, Rao AA, Grifford M, Cherniack AD, Zhang H, Poisson L, Carlotti CG Jr, Tirapelli DP, Rao A, Mikkelsen T, Lau CC, Yung WK, Rabadan R, Huse J, Brat DJ, Lehman NL, Barnholtz-Sloan JS, Zheng S, Hess K, Rao G, Meyerson M, Beroukhim R, Cooper L, Akbani R, Wrensch M, Haussler D, Aldape KD, Laird PW, Gutmann DH; TCGA Research Network; Noushmehr H, Iavarone A, Verhaak RG. Ceccarelli M, et al. Cell. 2016 Jan 28;164(3):550-63. doi: 10.1016/j.cell.2015.12.028. Cell. 2016. PMID: 26824661 Free PMC article.
Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas.
Liu Y, Sethi NS, Hinoue T, Schneider BG, Cherniack AD, Sanchez-Vega F, Seoane JA, Farshidfar F, Bowlby R, Islam M, Kim J, Chatila W, Akbani R, Kanchi RS, Rabkin CS, Willis JE, Wang KK, McCall SJ, Mishra L, Ojesina AI, Bullman S, Pedamallu CS, Lazar AJ, Sakai R; Cancer Genome Atlas Research Network; Thorsson V, Bass AJ, Laird PW. Liu Y, et al. Cancer Cell. 2018 Apr 9;33(4):721-735.e8. doi: 10.1016/j.ccell.2018.03.010. Epub 2018 Apr 2. Cancer Cell. 2018. PMID: 29622466 Free PMC article.
174 results