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NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology.
PeerJ. 2022 Mar 29;10:e13056. doi: 10.7717/peerj.13056. eCollection 2022.
PeerJ. 2022.
PMID: 35368340
Free PMC article.
An integrated 3-Dimensional Genome Modeling Engine for data-driven simulation of spatial genome organization.
Szałaj P, Tang Z, Michalski P, Pietal MJ, Luo OJ, Sadowski M, Li X, Radew K, Ruan Y, Plewczynski D.
Szałaj P, et al. Among authors: pietal mj.
Genome Res. 2016 Dec;26(12):1697-1709. doi: 10.1101/gr.205062.116. Epub 2016 Oct 27.
Genome Res. 2016.
PMID: 27789526
Free PMC article.
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GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function.
Pietal MJ, Bujnicki JM, Kozlowski LP.
Pietal MJ, et al.
Bioinformatics. 2015 Nov 1;31(21):3499-505. doi: 10.1093/bioinformatics/btv390. Epub 2015 Jun 30.
Bioinformatics. 2015.
PMID: 26130575
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RNAmap2D - calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures.
Pietal MJ, Szostak N, Rother KM, Bujnicki JM.
Pietal MJ, et al.
BMC Bioinformatics. 2012 Dec 21;13:333. doi: 10.1186/1471-2105-13-333.
BMC Bioinformatics. 2012.
PMID: 23259794
Free PMC article.
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PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.
Pietal MJ, Tuszynska I, Bujnicki JM.
Pietal MJ, et al.
Bioinformatics. 2007 Jun 1;23(11):1429-30. doi: 10.1093/bioinformatics/btm124. Epub 2007 Mar 30.
Bioinformatics. 2007.
PMID: 17400727
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