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Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, Yang G, Liu M, Shi H, Lu X, Chang S, Roy RS, Quadir F, Liu J, Cheng J, Antoniak A, Czaplewski C, Giełdoń A, Kogut M, Lipska AG, Liwo A, Lubecka EA, Maszota-Zieleniak M, Sieradzan AK, Ślusarz R, Wesołowski PA, Zięba K, Del Carpio Muñoz CA, Ichiishi E, Harmalkar A, Gray JJ, Bonvin AMJJ, Ambrosetti F, Vargas Honorato R, Jandova Z, Jiménez-García B, Koukos PI, Van Keulen S, Van Noort CW, Réau M, Roel-Touris J, Kotelnikov S, Padhorny D, Porter KA, Alekseenko A, Ignatov M, Desta I, Ashizawa R, Sun Z, Ghani U, Hashemi N, Vajda S, Kozakov D, Rosell M, Rodríguez-Lumbreras LA, Fernandez-Recio J, Karczynska A, Grudinin S, Yan Y, Li H, Lin P, Huang SY, Christoffer C, Terashi G, Verburgt J, Sarkar D, Aderinwale T, Wang X, Kihara D, Nakamura T, Hanazono Y, Gowthaman R, Guest JD, Yin R, Taherzadeh G, Pierce BG, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Sun Y, Zhu S, Shen Y, Park T, Woo H, Yang J, Kwon S, Won J, Seok C, Kiyota Y, Kobayashi S, Harada Y, Takeda-Shitaka M, Kundrotas PJ, Singh A, Vakser IA, Dapkūnas J, Olechnovič K, Venclovas Č, Duan R, Qiu L, Xu X, Zhang S, Zou X,… See abstract for full author list ➔ Lensink MF, et al. Among authors: pierce bg. Proteins. 2021 Dec;89(12):1800-1823. doi: 10.1002/prot.26222. Epub 2021 Sep 13. Proteins. 2021. PMID: 34453465 Free PMC article.
Protein-Protein Docking Benchmark 2.0: an update.
Mintseris J, Wiehe K, Pierce B, Anderson R, Chen R, Janin J, Weng Z. Mintseris J, et al. Proteins. 2005 Aug 1;60(2):214-6. doi: 10.1002/prot.20560. Proteins. 2005. PMID: 15981264
Protein-protein docking benchmark version 3.0.
Hwang H, Pierce B, Mintseris J, Janin J, Weng Z. Hwang H, et al. Proteins. 2008 Nov 15;73(3):705-9. doi: 10.1002/prot.22106. Proteins. 2008. PMID: 18491384 Free PMC article.
Performance of ZDOCK and ZRANK in CAPRI rounds 13-19.
Hwang H, Vreven T, Pierce BG, Hung JH, Weng Z. Hwang H, et al. Among authors: pierce bg. Proteins. 2010 Nov 15;78(15):3104-10. doi: 10.1002/prot.22764. Proteins. 2010. PMID: 20936681 Free PMC article.
103 results