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Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF.
Nat Commun. 2024 May 10;15(1):3956. doi: 10.1038/s41467-024-48322-0.
Nat Commun. 2024.
PMID: 38730277
Free PMC article.
Deep Learning-Assisted Analysis of Immunopeptidomics Data.
Gabriel W, Picciani M, The M, Wilhelm M.
Gabriel W, et al. Among authors: picciani m.
Methods Mol Biol. 2024;2758:457-483. doi: 10.1007/978-1-0716-3646-6_25.
Methods Mol Biol. 2024.
PMID: 38549030
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Network medicine-based epistasis detection in complex diseases: ready for quantum computing.
Hoffmann M, Poschenrieder JM, Incudini M, Baier S, Fitz A, Maier A, Hartung M, Hoffmann C, Trummer N, Adamowicz K, Picciani M, Scheibling E, Harl MV, Lesch I, Frey H, Kayser S, Wissenberg P, Schwartz L, Hafner L, Acharya A, Hackl L, Grabert G, Lee SG, Cho G, Cloward M, Jankowski J, Lee HK, Tsoy O, Wenke N, Pedersen AG, Bønnelykke K, Mandarino A, Melograna F, Schulz L, Climente-González H, Wilhelm M, Iapichino L, Wienbrandt L, Ellinghaus D, Van Steen K, Grossi M, Furth PA, Hennighausen L, Di Pierro A, Baumbach J, Kacprowski T, List M, Blumenthal DB.
Hoffmann M, et al. Among authors: picciani m.
medRxiv [Preprint]. 2023 Nov 9:2023.11.07.23298205. doi: 10.1101/2023.11.07.23298205.
medRxiv. 2023.
PMID: 38076997
Free PMC article.
Preprint.
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Oktoberfest: Open-source spectral library generation and rescoring pipeline based on Prosit.
Picciani M, Gabriel W, Giurcoiu VG, Shouman O, Hamood F, Lautenbacher L, Jensen CB, Müller J, Kalhor M, Soleymaniniya A, Kuster B, The M, Wilhelm M.
Picciani M, et al.
Proteomics. 2024 Apr;24(8):e2300112. doi: 10.1002/pmic.202300112. Epub 2023 Sep 6.
Proteomics. 2024.
PMID: 37672792
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A Thickened Stochastic Fields Approach for Turbulent Combustion Simulation.
Picciani MA, Richardson ES, Navarro-Martinez S.
Picciani MA, et al.
Flow Turbul Combust. 2018;101(4):1119-1136. doi: 10.1007/s10494-018-9954-y. Epub 2018 Aug 14.
Flow Turbul Combust. 2018.
PMID: 30613190
Free PMC article.
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Resolution Requirements in Stochastic Field Simulation of Turbulent Premixed Flames.
Picciani MA, Richardson ES, Navarro-Martinez S.
Picciani MA, et al.
Flow Turbul Combust. 2018;101(4):1103-1118. doi: 10.1007/s10494-018-9953-z. Epub 2018 Aug 11.
Flow Turbul Combust. 2018.
PMID: 30613189
Free PMC article.
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Simulating structural transitions by direct transition current sampling: the example of LJ38.
Picciani M, Athènes M, Kurchan J, Tailleur J.
Picciani M, et al.
J Chem Phys. 2011 Jul 21;135(3):034108. doi: 10.1063/1.3609972.
J Chem Phys. 2011.
PMID: 21786988
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