Phillippy AM - Search Results

1

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.

Low WY, Tearle R, Liu R, Koren S, Rhie A, Bickhart DM, Rosen BD, Kronenberg ZN, Kingan SB, Tseng E, Thibaud-Nissen F, Martin FJ, Billis K, Ghurye J, Hastie AR, Lee J, Pang AWC, Heaton MP, Phillippy AM, Hiendleder S, Smith TPL, Williams JL. Low WY, et al. Among authors: phillippy am. Nat Commun. 2020 Apr 29;11(1):2071. doi: 10.1038/s41467-020-15848-y. Nat Commun. 2020. PMID: 32350247 Free PMC article.

2

Complete Closed Genome Sequences of Mannheimia haemolytica Serotypes A1 and A6, Isolated from Cattle.

Harhay GP, Koren S, Phillippy AM, McVey DS, Kuszak J, Clawson ML, Harhay DM, Heaton MP, Chitko-McKown CG, Smith TP. Harhay GP, et al. Among authors: phillippy am. Genome Announc. 2013 May 16;1(3):e00188-13. doi: 10.1128/genomeA.00188-13. Genome Announc. 2013. PMID: 23682137 Free PMC article.

3

Reducing assembly complexity of microbial genomes with single-molecule sequencing.

Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, Mcvey SD, Radune D, Bergman NH, Phillippy AM. Koren S, et al. Among authors: phillippy am. Genome Biol. 2013;14(9):R101. doi: 10.1186/gb-2013-14-9-r101. Genome Biol. 2013. PMID: 24034426 Free PMC article.

4

Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever.

Harhay GP, McVey DS, Koren S, Phillippy AM, Bono J, Harhay DM, Clawson ML, Heaton MP, Chitko-McKown CG, Korlach J, Smith TP. Harhay GP, et al. Among authors: phillippy am. Genome Announc. 2014 Feb 13;2(1):e00084-14. doi: 10.1128/genomeA.00084-14. Genome Announc. 2014. PMID: 24526647 Free PMC article.

5

Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever.

Harhay GP, Murray RW, Lubbers B, Griffin D, Koren S, Phillippy AM, Harhay DM, Bono J, Clawson ML, Heaton MP, Chitko-McKown CG, Smith TP. Harhay GP, et al. Among authors: phillippy am. Genome Announc. 2014 Feb 13;2(1):e00088-14. doi: 10.1128/genomeA.00088-14. Genome Announc. 2014. PMID: 24526648 Free PMC article.

6

Automated ensemble assembly and validation of microbial genomes.

Koren S, Treangen TJ, Hill CM, Pop M, Phillippy AM. Koren S, et al. Among authors: phillippy am. BMC Bioinformatics. 2014 May 3;15:126. doi: 10.1186/1471-2105-15-126. BMC Bioinformatics. 2014. PMID: 24884846 Free PMC article.

7

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.

Treangen TJ, Ondov BD, Koren S, Phillippy AM. Treangen TJ, et al. Among authors: phillippy am. Genome Biol. 2014;15(11):524. doi: 10.1186/s13059-014-0524-x. Genome Biol. 2014. PMID: 25410596 Free PMC article.

8

One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly.

Koren S, Phillippy AM. Koren S, et al. Among authors: phillippy am. Curr Opin Microbiol. 2015 Feb;23:110-20. doi: 10.1016/j.mib.2014.11.014. Epub 2014 Dec 1. Curr Opin Microbiol. 2015. PMID: 25461581 Free article. Review.

9

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.

Berlin K, Koren S, Chin CS, Drake JP, Landolin JM, Phillippy AM. Berlin K, et al. Among authors: phillippy am. Nat Biotechnol. 2015 Jun;33(6):623-30. doi: 10.1038/nbt.3238. Epub 2015 May 25. Nat Biotechnol. 2015. PMID: 26006009

10

Corrigendum: Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.

Berlin K, Koren S, Chin CS, Drake JP, Landolin JM, Phillippy AM. Berlin K, et al. Among authors: phillippy am. Nat Biotechnol. 2015 Oct;33(10):1109. doi: 10.1038/nbt1015-1109c. Nat Biotechnol. 2015. PMID: 26448093 No abstract available.

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